Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3□□□□□ -1.93
CCDC42Q96M95 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3□□□□□ -1.93
CCDC42Q96M95 AC023128.2-201ENST00000420880 1223 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 AL160175.1-201ENST00000428124 247 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC3□□□□□ -1.93
CCDC42Q96M95 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3□□□□□ -1.93
CCDC42Q96M95 AC093156.1-201ENST00000440382 670 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 TPTE2P6-202ENST00000445572 1007 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 MRPL50P4-201ENST00000446432 475 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 AC112492.1-201ENST00000449607 712 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3□□□□□ -1.93
CCDC42Q96M95 PRSS3P4-201ENST00000453323 162 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 AF279873.1-201ENST00000523393 313 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3□□□□□ -1.93
CCDC42Q96M95 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3□□□□□ -1.93
CCDC42Q96M95 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3□□□□□ -1.93
CCDC42Q96M95 AL355836.1-201ENST00000555951 870 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 H3F3AP1-201ENST00000559984 334 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC42Q96M95 NF1P10-201ENST00000613227 742 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 CR381653.2-201ENST00000624041 768 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3□□□□□ -1.93
CCDC42Q96M95 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3□□□□□ -1.93
CCDC42Q96M95 AC000403.1-201ENST00000613696 3585 ntBASIC3□□□□□ -1.93
CCDC42Q96M95 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
CCDC42Q96M95 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC42Q96M95 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
CCDC42Q96M95 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC42Q96M95 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC42Q96M95 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC42Q96M95 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC42Q96M95 AP001350.1-201ENST00000601906 1524 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RNU6-386P-201ENST00000362650 107 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 SNORA38.1-201ENST00000364172 131 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RNU6-670P-201ENST00000364312 104 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RNU4-31P-201ENST00000384211 141 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RNVU1-14-201ENST00000384770 164 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 MIR7-3-201ENST00000384898 110 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RPL21P75-201ENST00000396599 483 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 RPL21P28-201ENST00000401418 483 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AL592114.1-201ENST00000403842 483 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC42Q96M95 AJ239321.1-201ENST00000424255 564 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 AL606490.7-201ENST00000433136 191 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 Z77249.1-201ENST00000444622 1175 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 NECAP1P2-201ENST00000455668 727 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 SNORA84-201ENST00000459229 133 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RPL21P39-201ENST00000463605 483 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC011979.1-201ENST00000472300 483 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 HMGN2P13-201ENST00000476476 274 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RPL21P93-201ENST00000480465 489 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC126121.1-201ENST00000482313 553 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC233702.1-201ENST00000482905 502 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC087190.1-201ENST00000484462 480 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 MTND3P6-201ENST00000485242 339 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 MTCO3P35-201ENST00000485582 781 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC093591.1-201ENST00000491435 481 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RPL21P129-201ENST00000491732 478 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 RPL21P16-201ENST00000495531 483 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC083906.5-201ENST00000503722 328 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 KLHL2P1-201ENST00000508691 521 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC091826.1-201ENST00000514065 313 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 SCARNA13-201ENST00000516672 275 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AP002404.1-201ENST00000532005 451 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC023158.1-201ENST00000561632 1025 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 AL390240.1-201ENST00000612950 384 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 AC073055.1-201ENST00000456901 1621 ntBASIC2.99□□□□□ -1.93
CCDC42Q96M95 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC42Q96M95 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC42Q96M95 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 RFESDP1-201ENST00000422350 461 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 RPL21P66-201ENST00000426566 466 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 UBE2V1P1-201ENST00000430836 445 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 OR6C71P-201ENST00000432580 913 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 Z99127.2-201ENST00000441426 334 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 snoU13.7-201ENST00000459220 104 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 AP002812.1-201ENST00000495378 474 ntBASIC2.98□□□□□ -1.93
CCDC42Q96M95 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC42Q96M95 MTCO2P32-201ENST00000514865 403 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 448.5 ms