Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
LMX1AQ8TE12 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LMX1AQ8TE12 MTCO1P24-201ENST00000515438 1558 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 MAPK6PS3-201ENST00000403865 2162 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AL049737.1-201ENST00000413920 1403 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 SRP72P2-201ENST00000344851 1979 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC004987.3-201ENST00000413879 771 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC063976.3-201ENST00000426849 329 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 SNORD109B-201ENST00000458961 67 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 SNORD109A-201ENST00000459128 67 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 RPL37P6-202ENST00000464216 403 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AP001025.2-201ENST00000490908 477 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 OR52A4P-203ENST00000498233 1014 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC090071.1-201ENST00000507713 644 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC010486.1-201ENST00000511793 424 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC103881.1-201ENST00000603476 538 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AL356490.1-201ENST00000623079 479 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AC004972.1-201ENST00000623934 2209 ntBASIC2.78□□□□□ -1.96
LMX1AQ8TE12 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
LMX1AQ8TE12 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 U3.6-201ENST00000363622 211 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 MIR196B-201ENST00000384852 84 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 SNORA48.8-201ENST00000391324 134 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AL590290.1-201ENST00000405336 380 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 RNA5SP80-201ENST00000410475 111 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 RNU2-52P-201ENST00000410680 190 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC105402.1-201ENST00000413336 545 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 GTF2IP23-201ENST00000423746 351 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC019097.1-201ENST00000424783 735 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AL109933.2-201ENST00000452651 260 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 RN7SL432P-201ENST00000484057 298 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 SUMO1P1-201ENST00000497904 306 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 SETP12-201ENST00000514068 805 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 OR4V1P-201ENST00000525394 1140 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AP002812.4-201ENST00000532139 286 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 CENPUP2-201ENST00000555897 1186 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 NRBF2P5-201ENST00000603087 788 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC096947.1-201ENST00000603233 470 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC090425.2-201ENST00000608818 501 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC107294.3-201ENST00000609211 526 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1AQ8TE12 MTND5P3-201ENST00000438536 1800 ntBASIC2.77□□□□□ -1.97
LMX1AQ8TE12 MTND5P27-201ENST00000428871 1720 ntBASIC2.76□□□□□ -1.97
LMX1AQ8TE12 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LMX1AQ8TE12 AC005183.1-201ENST00000603687 1979 ntBASIC2.76□□□□□ -1.97
LMX1AQ8TE12 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LMX1AQ8TE12 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LMX1AQ8TE12 AC092326.2-201ENST00000624772 1561 ntBASIC2.76□□□□□ -1.97
LMX1AQ8TE12 RNU6-805P-201ENST00000365643 106 ntBASIC2.76□□□□□ -1.97
LMX1AQ8TE12 SNORA46-201ENST00000384762 135 ntBASIC2.76□□□□□ -1.97
LMX1AQ8TE12 AL031679.1-201ENST00000400616 525 ntBASIC2.76□□□□□ -1.97
LMX1AQ8TE12 HNRNPDP2-201ENST00000406475 478 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms