Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CCNHP1-201ENST00000513311 678 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 RN7SKP287-201ENST00000516546 266 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 MRPS36P5-201ENST00000551909 298 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 NIFKP6-201ENST00000598115 845 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AC022387.2-201ENST00000604050 448 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.16□□□□□ -1.9
COL4A4P53420 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.16□□□□□ -1.9
COL4A4P53420 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
COL4A4P53420 AC098679.4-201ENST00000624241 654 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
COL4A4P53420 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.16□□□□□ -1.9
COL4A4P53420 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 AC017002.4-201ENST00000604721 1525 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AL365361.1-201ENST00000566942 3481 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 MTND4P4-201ENST00000439033 1366 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.15□□□□□ -1.9
COL4A4P53420 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
COL4A4P53420 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
COL4A4P53420 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
COL4A4P53420 Y_RNA.318-201ENST00000365131 97 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 SNORA81-201ENST00000408493 178 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
COL4A4P53420 RPL32P35-201ENST00000415214 394 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 MTCO2P21-201ENST00000419780 677 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 BX119904.4-201ENST00000424402 301 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC3.15□□□□□ -1.9
COL4A4P53420 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.15□□□□□ -1.9
COL4A4P53420 B3GNT2P1-201ENST00000434960 952 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 MTND5P8-201ENST00000449817 1083 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 RPL31P13-201ENST00000484151 370 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.15□□□□□ -1.9
COL4A4P53420 AC083906.5-201ENST00000503722 328 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 ANXA2P1-201ENST00000505539 926 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC3.15□□□□□ -1.9
COL4A4P53420 AC017037.2-201ENST00000513850 890 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.15□□□□□ -1.9
COL4A4P53420 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
COL4A4P53420 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.15□□□□□ -1.9
COL4A4P53420 MTCYBP33-201ENST00000575007 1130 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 AC008088.1-201ENST00000580993 280 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.15□□□□□ -1.9
COL4A4P53420 AC068620.3-201ENST00000602749 560 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 AL035413.2-201ENST00000604801 525 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.9
COL4A4P53420 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.15□□□□□ -1.9
COL4A4P53420 AC007275.1-201ENST00000621243 671 ntBASIC3.15□□□□□ -1.9
COL4A4P53420 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.15□□□□□ -1.9
COL4A4P53420 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL4A4P53420 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL4A4P53420 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
COL4A4P53420 AC093831.2-201ENST00000624393 3427 ntBASIC3.15□□□□□ -1.91
COL4A4P53420 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL4A4P53420 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 MTCO1P7-201ENST00000419523 1542 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AL357078.2-201ENST00000416486 427 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 NPM1P24-201ENST00000428039 894 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC007563.3-201ENST00000433233 371 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.14□□□□□ -1.91
COL4A4P53420 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 snoU13.26-201ENST00000459452 105 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC113398.2-201ENST00000507630 558 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC119751.1-201ENST00000513357 765 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 RNU4-29P-201ENST00000515943 174 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 OR5G4P-201ENST00000525251 760 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 AP000916.1-201ENST00000533869 835 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A4P53420 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC090312.2-201ENST00000582687 378 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AL022161.1-201ENST00000604390 213 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC022509.4-201ENST00000621404 572 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC097372.4-201ENST00000625025 466 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL4A4P53420 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 MTND4P5-201ENST00000435821 1374 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A4P53420 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
COL4A4P53420 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
COL4A4P53420 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
COL4A4P53420 U3.42-201ENST00000408746 214 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 RNA5SP107-201ENST00000411358 122 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A4P53420 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC125238.1-201ENST00000448842 249 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 SEPT7P6-201ENST00000469999 1143 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC093278.1-201ENST00000494700 600 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms