Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC110801.1-201ENST00000623590 212 ntBASIC4.5□□□□□ -1.69
CTCFP49711 AL512506.2-201ENST00000624472 458 ntBASIC4.5□□□□□ -1.69
CTCFP49711 MIR4496-201ENST00000635896 61 ntBASIC4.5□□□□□ -1.69
CTCFP49711 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CTCFP49711 AC005183.1-201ENST00000603687 1979 ntBASIC4.5□□□□□ -1.69
CTCFP49711 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CTCFP49711 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
CTCFP49711 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CTCFP49711 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CTCFP49711 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CTCFP49711 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CTCFP49711 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CTCFP49711 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CTCFP49711 RNU4-28P-201ENST00000364739 141 ntBASIC4.49□□□□□ -1.69
CTCFP49711 SUGT1P1-201ENST00000379514 476 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AL121978.1-201ENST00000402778 359 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AC092634.6-201ENST00000418558 192 ntBASIC4.49□□□□□ -1.69
CTCFP49711 BX842559.1-201ENST00000419615 532 ntBASIC4.49□□□□□ -1.69
CTCFP49711 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC4.49□□□□□ -1.69
CTCFP49711 B3GNT2P1-201ENST00000434960 952 ntBASIC4.49□□□□□ -1.69
CTCFP49711 NDUFA5P7-201ENST00000452914 242 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC4.49□□□□□ -1.69
CTCFP49711 RFC5P1-201ENST00000454419 874 ntBASIC4.49□□□□□ -1.69
CTCFP49711 RPL36AP13-201ENST00000457490 317 ntBASIC4.49□□□□□ -1.69
CTCFP49711 PNPLA4P1-201ENST00000458328 305 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.49□□□□□ -1.69
CTCFP49711 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.49□□□□□ -1.69
CTCFP49711 AC106872.2-201ENST00000494303 480 ntBASIC4.49□□□□□ -1.69
CTCFP49711 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.49□□□□□ -1.69
CTCFP49711 BOLA3P3-201ENST00000505182 232 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AC118282.1-201ENST00000506408 765 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.49□□□□□ -1.69
CTCFP49711 AC008837.2-201ENST00000513076 418 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AC112673.1-201ENST00000513168 575 ntBASIC4.49□□□□□ -1.69
CTCFP49711 IGKV2-38-201ENST00000517443 247 ntBASIC4.49□□□□□ -1.69
CTCFP49711 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.49□□□□□ -1.69
CTCFP49711 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.49□□□□□ -1.69
CTCFP49711 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.49□□□□□ -1.69
CTCFP49711 AC093519.1-201ENST00000566109 298 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.49□□□□□ -1.69
CTCFP49711 AC020914.6-201ENST00000594327 272 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AC007349.4-201ENST00000608114 532 ntBASIC4.49□□□□□ -1.69
CTCFP49711 uc_338.32-201ENST00000615087 172 ntBASIC4.49□□□□□ -1.69
CTCFP49711 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.49□□□□□ -1.69
CTCFP49711 AC019278.1-201ENST00000623516 479 ntBASIC4.49□□□□□ -1.69
CTCFP49711 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CTCFP49711 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
CTCFP49711 AC018555.1-201ENST00000567548 1980 ntBASIC4.49□□□□□ -1.69
CTCFP49711 NMD3P1-201ENST00000439704 1488 ntBASIC4.49□□□□□ -1.69
CTCFP49711 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.49□□□□□ -1.69
CTCFP49711 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
CTCFP49711 AC109315.1-201ENST00000584143 1347 ntBASIC4.48□□□□□ -1.69
CTCFP49711 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
CTCFP49711 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
CTCFP49711 RNU6-251P-201ENST00000363235 104 ntBASIC4.48□□□□□ -1.69
CTCFP49711 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
CTCFP49711 AL590084.1-201ENST00000407885 387 ntBASIC4.48□□□□□ -1.69
CTCFP49711 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.48□□□□□ -1.69
CTCFP49711 AL161449.1-201ENST00000414531 1199 ntBASIC4.48□□□□□ -1.69
CTCFP49711 AC005019.1-201ENST00000436455 431 ntBASIC4.48□□□□□ -1.69
CTCFP49711 RPS26P56-201ENST00000444468 240 ntBASIC4.48□□□□□ -1.69
CTCFP49711 HMGN3P1-201ENST00000453847 193 ntBASIC4.48□□□□□ -1.69
CTCFP49711 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.48□□□□□ -1.69
CTCFP49711 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 S100A11P2-201ENST00000467589 312 ntBASIC4.48□□□□□ -1.69
CTCFP49711 AC108734.3-201ENST00000481241 1165 ntBASIC4.48□□□□□ -1.69
CTCFP49711 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 RNU2-27P-201ENST00000516185 142 ntBASIC4.48□□□□□ -1.69
CTCFP49711 MRPS36P3-201ENST00000519284 130 ntBASIC4.48□□□□□ -1.69
CTCFP49711 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.48□□□□□ -1.69
CTCFP49711 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.48□□□□□ -1.69
CTCFP49711 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.48□□□□□ -1.69
CTCFP49711 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.48□□□□□ -1.69
CTCFP49711 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC4.48□□□□□ -1.69
CTCFP49711 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.48□□□□□ -1.69
CTCFP49711 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.48□□□□□ -1.69
CTCFP49711 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.48□□□□□ -1.69
CTCFP49711 HSPE1P14-201ENST00000605812 302 ntBASIC4.48□□□□□ -1.69
CTCFP49711 AC008147.4-201ENST00000617570 1204 ntBASIC4.48□□□□□ -1.69
CTCFP49711 AC098679.5-201ENST00000624394 571 ntBASIC4.48□□□□□ -1.69
CTCFP49711 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 AC027287.1-201ENST00000553115 1453 ntBASIC4.48□□□□□ -1.69
CTCFP49711 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
CTCFP49711 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CTCFP49711 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
CTCFP49711 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
CTCFP49711 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
CTCFP49711 SNORD35B-201ENST00000363660 87 ntBASIC4.47□□□□□ -1.69
CTCFP49711 RNU6-560P-201ENST00000364007 108 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.47□□□□□ -1.69
CTCFP49711 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms