Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SOX3P41225 AC008725.1-201ENST00000605123 2263 ntBASIC3.54□□□□□ -1.84
SOX3P41225 MTND4P34-201ENST00000572715 1371 ntBASIC3.53□□□□□ -1.84
SOX3P41225 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SOX3P41225 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SOX3P41225 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SOX3P41225 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SOX3P41225 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 AC073264.1-201ENST00000411508 416 ntBASIC3.53□□□□□ -1.84
SOX3P41225 TIMM9P2-201ENST00000419324 266 ntBASIC3.53□□□□□ -1.84
SOX3P41225 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 RPS6P15-201ENST00000431996 751 ntBASIC3.53□□□□□ -1.84
SOX3P41225 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.53□□□□□ -1.84
SOX3P41225 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.53□□□□□ -1.84
SOX3P41225 MTCO3P20-201ENST00000454926 688 ntBASIC3.53□□□□□ -1.84
SOX3P41225 DNAJC19P1-201ENST00000455312 319 ntBASIC3.53□□□□□ -1.84
SOX3P41225 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 RPL37P6-202ENST00000464216 403 ntBASIC3.53□□□□□ -1.84
SOX3P41225 S100A11P1-201ENST00000477525 312 ntBASIC3.53□□□□□ -1.84
SOX3P41225 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 MTND2P38-201ENST00000522536 667 ntBASIC3.53□□□□□ -1.84
SOX3P41225 ZNF705CP-201ENST00000530515 889 ntBASIC3.53□□□□□ -1.84
SOX3P41225 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.53□□□□□ -1.84
SOX3P41225 MRPS36P5-201ENST00000551909 298 ntBASIC3.53□□□□□ -1.84
SOX3P41225 CBX3P5-201ENST00000552017 521 ntBASIC3.53□□□□□ -1.84
SOX3P41225 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 MIR4458-201ENST00000578872 75 ntBASIC3.53□□□□□ -1.84
SOX3P41225 AC008751.2-201ENST00000597885 980 ntBASIC3.53□□□□□ -1.84
SOX3P41225 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.53□□□□□ -1.84
SOX3P41225 AL139344.1-201ENST00000605228 195 ntBASIC3.53□□□□□ -1.84
SOX3P41225 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.53□□□□□ -1.84
SOX3P41225 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.53□□□□□ -1.84
SOX3P41225 MTND2P41-201ENST00000637599 773 ntBASIC3.53□□□□□ -1.84
SOX3P41225 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SOX3P41225 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SOX3P41225 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SOX3P41225 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
SOX3P41225 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SOX3P41225 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
SOX3P41225 ZNF37BP-203ENST00000452306 1352 ntBASIC3.52□□□□□ -1.85
SOX3P41225 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.52□□□□□ -1.85
SOX3P41225 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.52□□□□□ -1.85
SOX3P41225 MAPK10-373ENST00000641983 6772 ntBASIC3.52□□□□□ -1.85
SOX3P41225 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SOX3P41225 SNRPEP3-201ENST00000338402 276 ntBASIC3.52□□□□□ -1.85
SOX3P41225 SNORA62.3-201ENST00000365110 153 ntBASIC3.52□□□□□ -1.85
SOX3P41225 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.52□□□□□ -1.85
SOX3P41225 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.52□□□□□ -1.85
SOX3P41225 AL359837.1-201ENST00000381357 287 ntBASIC3.52□□□□□ -1.85
SOX3P41225 RNU6-657P-201ENST00000383904 107 ntBASIC3.52□□□□□ -1.85
SOX3P41225 SSXP10-201ENST00000402595 565 ntBASIC3.52□□□□□ -1.85
SOX3P41225 RPL31P2-201ENST00000413849 377 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 RPL21P109-201ENST00000422213 475 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AL591419.1-201ENST00000427423 339 ntBASIC3.52□□□□□ -1.85
SOX3P41225 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SOX3P41225 SKP1P1-201ENST00000438081 489 ntBASIC3.52□□□□□ -1.85
SOX3P41225 NOTCH2P1-201ENST00000443481 624 ntBASIC3.52□□□□□ -1.85
SOX3P41225 MTCYBP11-201ENST00000447254 1109 ntBASIC3.52□□□□□ -1.85
SOX3P41225 BX276092.4-201ENST00000452056 248 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.52□□□□□ -1.85
SOX3P41225 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 SETP14-201ENST00000497538 873 ntBASIC3.52□□□□□ -1.85
SOX3P41225 RNF138P1-201ENST00000502765 546 ntBASIC3.52□□□□□ -1.85
SOX3P41225 RN7SKP277-201ENST00000516895 283 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 AP000926.4-201ENST00000527351 454 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 PTP4A1P6-201ENST00000531034 478 ntBASIC3.52□□□□□ -1.85
SOX3P41225 SLC2A13P1-201ENST00000531560 322 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.52□□□□□ -1.85
SOX3P41225 AC007424.1-203ENST00000554613 687 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.52□□□□□ -1.85
SOX3P41225 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.52□□□□□ -1.85
SOX3P41225 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.52□□□□□ -1.85
SOX3P41225 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.52□□□□□ -1.85
SOX3P41225 AC021171.1-201ENST00000603137 706 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AL031281.1-201ENST00000604049 488 ntBASIC3.52□□□□□ -1.85
SOX3P41225 AC112230.1-201ENST00000604342 547 ntBASIC3.52□□□□□ -1.85
SOX3P41225 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.52□□□□□ -1.85
SOX3P41225 AL121772.2-201ENST00000614331 297 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 183.8 ms