Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.38□□□□□ -1.87
BRCA1P38398 AC011602.1-201ENST00000546484 331 ntBASIC3.38□□□□□ -1.87
BRCA1P38398 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.38□□□□□ -1.87
BRCA1P38398 AC078899.3-201ENST00000599065 212 ntBASIC3.38□□□□□ -1.87
BRCA1P38398 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.38□□□□□ -1.87
BRCA1P38398 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
BRCA1P38398 AC009159.1-201ENST00000618386 642 ntBASIC3.38□□□□□ -1.87
BRCA1P38398 AL356490.1-201ENST00000623079 479 ntBASIC3.38□□□□□ -1.87
BRCA1P38398 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.38□□□□□ -1.87
BRCA1P38398 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.38□□□□□ -1.87
BRCA1P38398 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
BRCA1P38398 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
BRCA1P38398 RNU6-152P-201ENST00000384037 107 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 DHFRP5-201ENST00000406944 564 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 OR51A3P-201ENST00000413596 924 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 RPS7P13-201ENST00000413955 498 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 ZNF92P1Y-201ENST00000415010 1191 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.37□□□□□ -1.87
BRCA1P38398 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.37□□□□□ -1.87
BRCA1P38398 Z85994.2-201ENST00000434327 452 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 AC067805.1-201ENST00000559344 470 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 AC027104.1-201ENST00000563702 681 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 AC110792.4-201ENST00000609843 298 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 AC025034.2-201ENST00000623264 286 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
BRCA1P38398 AC090229.1-201ENST00000590983 1609 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 MIR421-201ENST00000365696 85 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 AL031736.2-201ENST00000426573 787 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 HMGB3P8-201ENST00000449709 577 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 RNU6-1004P-201ENST00000516584 111 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
BRCA1P38398 ZNF92P3-201ENST00000596594 954 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 AL365503.1-201ENST00000605247 905 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
BRCA1P38398 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.37□□□□□ -1.87
BRCA1P38398 AC079228.1-201ENST00000624774 1049 ntBASIC3.37□□□□□ -1.87
BRCA1P38398 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.37□□□□□ -1.87
BRCA1P38398 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
BRCA1P38398 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
BRCA1P38398 METTL21EP-201ENST00000298105 713 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
BRCA1P38398 RN7SKP58-201ENST00000411010 305 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 RNA5SP247-201ENST00000411181 105 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 RPL32P35-201ENST00000415214 394 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 AL049610.1-201ENST00000423374 372 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC3.36□□□□□ -1.87
BRCA1P38398 HMGB1P26-201ENST00000452520 628 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 AC010468.1-201ENST00000461022 817 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 AC003982.1-202ENST00000469928 248 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 MTND3P6-201ENST00000485242 339 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 UBTFL10-201ENST00000528532 562 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 PDCL2P2-201ENST00000533651 189 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 PDCD5P1-201ENST00000543528 309 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
BRCA1P38398 AC025811.1-201ENST00000604312 472 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 AC016911.1-201ENST00000613297 452 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC3.36□□□□□ -1.87
BRCA1P38398 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.36□□□□□ -1.87
BRCA1P38398 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.36□□□□□ -1.87
BRCA1P38398 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
BRCA1P38398 RNU6-31P-201ENST00000384388 108 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 ATF1P1-201ENST00000406040 927 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 HMGB3P6-201ENST00000444896 598 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 HMGN1P18-201ENST00000457642 277 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 RN7SL330P-201ENST00000469709 307 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 AC078817.1-201ENST00000492623 435 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 AC106872.2-201ENST00000494303 480 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 AC108078.3-201ENST00000502633 489 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.35□□□□□ -1.87
BRCA1P38398 AP000867.2-201ENST00000532468 320 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.35□□□□□ -1.87
BRCA1P38398 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.35□□□□□ -1.87
BRCA1P38398 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
BRCA1P38398 TAB3P1-202ENST00000452645 1634 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
BRCA1P38398 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
BRCA1P38398 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 RNU4-26P-201ENST00000410270 107 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 AL031663.1-201ENST00000437445 219 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.35□□□□□ -1.87
BRCA1P38398 RN7SKP244-201ENST00000516513 307 ntBASIC3.35□□□□□ -1.87
BRCA1P38398 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.35□□□□□ -1.87
BRCA1P38398 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.35□□□□□ -1.87
BRCA1P38398 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.35□□□□□ -1.87
BRCA1P38398 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
BRCA1P38398 HSPA8P4-201ENST00000511877 1920 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 ZNF33CP-201ENST00000432492 2030 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 HNRNPDP2-201ENST00000406475 478 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 Z86062.1-201ENST00000406773 777 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 BTF3P7-201ENST00000407097 488 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.34□□□□□ -1.87
BRCA1P38398 AL356320.1-201ENST00000429616 163 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 RPS6P12-201ENST00000432491 726 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
BRCA1P38398 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.34□□□□□ -1.87
BRCA1P38398 AC008716.1-201ENST00000511084 513 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.34□□□□□ -1.87
BRCA1P38398 AC096725.1-201ENST00000514266 313 ntBASIC3.34□□□□□ -1.87
BRCA1P38398 RN7SKP96-201ENST00000516948 297 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms