Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 Y_RNA.26-201ENST00000362539 101 ntBASIC5.69□□□□□ -1.5
MSX1P28360 RNU1-49P-201ENST00000363468 159 ntBASIC5.69□□□□□ -1.5
MSX1P28360 RNU1-130P-201ENST00000363930 160 ntBASIC5.69□□□□□ -1.5
MSX1P28360 RNU6-715P-201ENST00000365204 103 ntBASIC5.69□□□□□ -1.5
MSX1P28360 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
MSX1P28360 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
MSX1P28360 SNORA70H-201ENST00000383910 135 ntBASIC5.69□□□□□ -1.5
MSX1P28360 SNORA70J-201ENST00000384182 135 ntBASIC5.69□□□□□ -1.5
MSX1P28360 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 RN7SKP159-201ENST00000410657 292 ntBASIC5.69□□□□□ -1.5
MSX1P28360 HMGN1P20-201ENST00000411849 300 ntBASIC5.69□□□□□ -1.5
MSX1P28360 MTCO3P19-201ENST00000415864 321 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX1P28360 PSMA2P3-201ENST00000429685 675 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AL132765.1-201ENST00000434165 553 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX1P28360 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX1P28360 AC104332.1-201ENST00000440471 797 ntBASIC5.69□□□□□ -1.5
MSX1P28360 H3F3BP1-201ENST00000440551 403 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AC097463.1-201ENST00000447288 481 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX1P28360 RPL7P5-201ENST00000471472 736 ntBASIC5.69□□□□□ -1.5
MSX1P28360 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 AC026784.1-201ENST00000507986 352 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AC090958.1-201ENST00000511122 351 ntBASIC5.69□□□□□ -1.5
MSX1P28360 RNA5SP206-201ENST00000516703 121 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 AP003396.4-201ENST00000527574 265 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX1P28360 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX1P28360 NPIPB1P-202ENST00000588786 828 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.69□□□□□ -1.5
MSX1P28360 AP001823.1-201ENST00000604056 1003 ntBASIC5.69□□□□□ -1.5
MSX1P28360 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.69□□□□□ -1.5
MSX1P28360 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 AC024651.2-201ENST00000562480 2098 ntBASIC5.69□□□□□ -1.5
MSX1P28360 ZNF72P-201ENST00000425869 1908 ntBASIC5.69□□□□□ -1.5
MSX1P28360 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX1P28360 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 AC125336.1-201ENST00000508893 2827 ntBASIC5.69□□□□□ -1.5
MSX1P28360 AC123769.1-201ENST00000530992 3192 ntBASIC5.69□□□□□ -1.5
MSX1P28360 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
MSX1P28360 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX1P28360 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX1P28360 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX1P28360 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
MSX1P28360 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX1P28360 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSX1P28360 RNA5SP346-201ENST00000363541 121 ntBASIC5.68□□□□□ -1.5
MSX1P28360 SNORA23-201ENST00000365128 182 ntBASIC5.68□□□□□ -1.5
MSX1P28360 RNU6-806P-201ENST00000365147 105 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC108032.1-201ENST00000416706 207 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX1P28360 RPL7P2-201ENST00000427639 268 ntBASIC5.68□□□□□ -1.5
MSX1P28360 RPL12P16-201ENST00000431098 498 ntBASIC5.68□□□□□ -1.5
MSX1P28360 OR3D1P-201ENST00000438288 955 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC127537.2-201ENST00000439258 465 ntBASIC5.68□□□□□ -1.5
MSX1P28360 RPS3AP12-201ENST00000443616 753 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC243772.1-201ENST00000451620 410 ntBASIC5.68□□□□□ -1.5
MSX1P28360 MTCO3P8-201ENST00000453691 755 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC104164.1-201ENST00000460282 590 ntBASIC5.68□□□□□ -1.5
MSX1P28360 FTH1P2-201ENST00000466086 412 ntBASIC5.68□□□□□ -1.5
MSX1P28360 RN7SL214P-201ENST00000487317 265 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC011005.2-201ENST00000487324 359 ntBASIC5.68□□□□□ -1.5
MSX1P28360 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX1P28360 SNORA40.15-201ENST00000516884 107 ntBASIC5.68□□□□□ -1.5
MSX1P28360 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX1P28360 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX1P28360 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.68□□□□□ -1.5
MSX1P28360 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX1P28360 AC025423.5-201ENST00000550230 219 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.68□□□□□ -1.5
MSX1P28360 MIR3189-201ENST00000578735 73 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC008507.3-201ENST00000585753 472 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX1P28360 PSMA6P4-201ENST00000603247 718 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AL670379.6-201ENST00000603753 252 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AC005191.1-201ENST00000603950 358 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AL670379.1-201ENST00000604752 252 ntBASIC5.68□□□□□ -1.5
MSX1P28360 RAC1P9-201ENST00000604990 392 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AL670379.5-201ENST00000605253 252 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AL670379.8-201ENST00000605353 252 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms