Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-97P-201ENST00000363387 104 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 RNU6-214P-201ENST00000384130 107 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 MIR625-201ENST00000385047 85 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 RNU6-278P-201ENST00000390945 109 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AC016769.3-201ENST00000396562 315 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AL645927.1-201ENST00000396783 406 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AL136372.1-201ENST00000403060 228 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 SNORA11-201ENST00000408789 128 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 RNU6-130P-201ENST00000411112 103 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 RPL35AP31-201ENST00000418340 337 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 RPL21P109-201ENST00000422213 475 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.38□□□□□ -1.55
COL8A1P27658 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.38□□□□□ -1.55
COL8A1P27658 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.38□□□□□ -1.55
COL8A1P27658 RPEP5-201ENST00000441137 268 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 RN7SL329P-201ENST00000467740 299 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AC087385.1-201ENST00000475062 312 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.38□□□□□ -1.55
COL8A1P27658 AC004453.1-201ENST00000487895 408 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 RPS27P26-201ENST00000494583 239 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AC090958.1-201ENST00000511122 351 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 SNORA31.18-201ENST00000517043 134 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 IGKV2-36-201ENST00000519999 223 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC5.38□□□□□ -1.55
COL8A1P27658 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
COL8A1P27658 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC5.38□□□□□ -1.55
COL8A1P27658 AC004024.1-201ENST00000549244 247 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.38□□□□□ -1.55
COL8A1P27658 COX6CP3-201ENST00000580869 223 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.38□□□□□ -1.55
COL8A1P27658 AC006023.2-201ENST00000609916 167 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 Z95327.2-201ENST00000414579 1873 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
COL8A1P27658 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.38□□□□□ -1.55
COL8A1P27658 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
COL8A1P27658 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.38□□□□□ -1.55
COL8A1P27658 CTNNA1P1-201ENST00000515849 2728 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
COL8A1P27658 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL8A1P27658 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.37□□□□□ -1.55
COL8A1P27658 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.37□□□□□ -1.55
COL8A1P27658 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.37□□□□□ -1.55
COL8A1P27658 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.37□□□□□ -1.55
COL8A1P27658 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 CASC19-204ENST00000641001 2055 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
COL8A1P27658 SNORA64.1-201ENST00000362600 132 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 snoU2_19.2-201ENST00000363024 80 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL8A1P27658 RNU6-804P-201ENST00000384286 107 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 RNU6-921P-201ENST00000384361 107 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 SNORD70.1-201ENST00000391007 85 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 BMS1P22-201ENST00000414726 313 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 RPL23AP25-201ENST00000430973 463 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 AL353997.1-201ENST00000432936 108 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 PPIAP10-201ENST00000438675 458 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 AC005532.2-201ENST00000467154 373 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 COPS8P2-201ENST00000473228 627 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 AC021382.1-201ENST00000483523 359 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.37□□□□□ -1.55
COL8A1P27658 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.37□□□□□ -1.55
COL8A1P27658 RNU6-1338P-201ENST00000516328 91 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 AF186190.1-201ENST00000517470 480 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.37□□□□□ -1.55
COL8A1P27658 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.37□□□□□ -1.55
COL8A1P27658 AL451044.1-201ENST00000604867 238 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 AC009570.1-201ENST00000609599 745 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 RPSAP73-201ENST00000614820 330 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 U6.106-201ENST00000636360 105 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 ZNF402P-201ENST00000404435 3100 ntBASIC5.37□□□□□ -1.55
COL8A1P27658 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms