Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.24□□□□□ -1.73
BDNFP23560 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
BDNFP23560 RNU6-560P-201ENST00000364007 108 ntBASIC4.24□□□□□ -1.73
BDNFP23560 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BDNFP23560 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.24□□□□□ -1.73
BDNFP23560 MIR1290-201ENST00000408735 78 ntBASIC4.24□□□□□ -1.73
BDNFP23560 AC233728.2-201ENST00000425348 757 ntBASIC4.24□□□□□ -1.73
BDNFP23560 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.24□□□□□ -1.73
BDNFP23560 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.24□□□□□ -1.73
BDNFP23560 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.24□□□□□ -1.73
BDNFP23560 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.24□□□□□ -1.73
BDNFP23560 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.24□□□□□ -1.73
BDNFP23560 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.24□□□□□ -1.73
BDNFP23560 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.24□□□□□ -1.73
BDNFP23560 RPL7L1P8-201ENST00000469911 741 ntBASIC4.24□□□□□ -1.73
BDNFP23560 RN7SL585P-201ENST00000470538 280 ntBASIC4.24□□□□□ -1.73
BDNFP23560 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.24□□□□□ -1.73
BDNFP23560 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.24□□□□□ -1.73
BDNFP23560 AC091516.1-201ENST00000549191 703 ntBASIC4.24□□□□□ -1.73
BDNFP23560 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BDNFP23560 MED28P6-201ENST00000558776 231 ntBASIC4.24□□□□□ -1.73
BDNFP23560 AL132657.2-201ENST00000564417 358 ntBASIC4.24□□□□□ -1.73
BDNFP23560 AC007599.1-201ENST00000568688 1174 ntBASIC4.24□□□□□ -1.73
BDNFP23560 AL592436.1-201ENST00000605135 558 ntBASIC4.24□□□□□ -1.73
BDNFP23560 SNORA51-201ENST00000606420 132 ntBASIC4.24□□□□□ -1.73
BDNFP23560 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
BDNFP23560 AC084824.4-201ENST00000620106 731 ntBASIC4.24□□□□□ -1.73
BDNFP23560 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.24□□□□□ -1.73
BDNFP23560 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.24□□□□□ -1.73
BDNFP23560 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BDNFP23560 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.24□□□□□ -1.73
BDNFP23560 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
BDNFP23560 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.24□□□□□ -1.73
BDNFP23560 AL513185.3-201ENST00000433335 1300 ntBASIC4.23□□□□□ -1.73
BDNFP23560 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.23□□□□□ -1.73
BDNFP23560 FRG1BP-201ENST00000278882 761 ntBASIC4.23□□□□□ -1.73
BDNFP23560 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.23□□□□□ -1.73
BDNFP23560 RNA5SP388-201ENST00000362584 119 ntBASIC4.23□□□□□ -1.73
BDNFP23560 RNU6-882P-201ENST00000391025 103 ntBASIC4.23□□□□□ -1.73
BDNFP23560 MTATP6P20-201ENST00000414147 562 ntBASIC4.23□□□□□ -1.73
BDNFP23560 TIMM9P2-201ENST00000419324 266 ntBASIC4.23□□□□□ -1.73
BDNFP23560 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.23□□□□□ -1.73
BDNFP23560 SDCBPP1-201ENST00000440192 890 ntBASIC4.23□□□□□ -1.73
BDNFP23560 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.23□□□□□ -1.73
BDNFP23560 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.23□□□□□ -1.73
BDNFP23560 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.23□□□□□ -1.73
BDNFP23560 AC023424.2-201ENST00000493479 777 ntBASIC4.23□□□□□ -1.73
BDNFP23560 MTND4LP31-201ENST00000514859 294 ntBASIC4.23□□□□□ -1.73
BDNFP23560 MTATP6P9-201ENST00000515039 680 ntBASIC4.23□□□□□ -1.73
BDNFP23560 RNA5SP179-201ENST00000517284 121 ntBASIC4.23□□□□□ -1.73
BDNFP23560 AC021451.1-201ENST00000523498 1129 ntBASIC4.23□□□□□ -1.73
BDNFP23560 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
BDNFP23560 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.23□□□□□ -1.73
BDNFP23560 AC055876.1-202ENST00000567053 138 ntBASIC4.23□□□□□ -1.73
BDNFP23560 MIR5047-201ENST00000579212 100 ntBASIC4.23□□□□□ -1.73
BDNFP23560 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.23□□□□□ -1.73
BDNFP23560 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.23□□□□□ -1.73
BDNFP23560 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.23□□□□□ -1.73
BDNFP23560 AC069431.2-201ENST00000604149 1099 ntBASIC4.23□□□□□ -1.73
BDNFP23560 AC091167.4-201ENST00000605079 184 ntBASIC4.23□□□□□ -1.73
BDNFP23560 AC008962.1-201ENST00000605729 304 ntBASIC4.23□□□□□ -1.73
BDNFP23560 MIR6076-201ENST00000617521 113 ntBASIC4.23□□□□□ -1.73
BDNFP23560 AC008785.1-201ENST00000624475 456 ntBASIC4.23□□□□□ -1.73
BDNFP23560 AL445984.1-201ENST00000637834 659 ntBASIC4.23□□□□□ -1.73
BDNFP23560 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
BDNFP23560 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
BDNFP23560 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
BDNFP23560 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
BDNFP23560 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BDNFP23560 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
BDNFP23560 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BDNFP23560 AC021755.1-201ENST00000559747 1447 ntBASIC4.22□□□□□ -1.73
BDNFP23560 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
BDNFP23560 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BDNFP23560 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.22□□□□□ -1.73
BDNFP23560 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
BDNFP23560 MIR134-201ENST00000385258 73 ntBASIC4.22□□□□□ -1.73
BDNFP23560 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
BDNFP23560 RPL32P23-201ENST00000397237 405 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AL138878.1-201ENST00000405131 347 ntBASIC4.22□□□□□ -1.73
BDNFP23560 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.22□□□□□ -1.73
BDNFP23560 TMEM167AP1-201ENST00000423409 219 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.22□□□□□ -1.73
BDNFP23560 CDC27P1-201ENST00000445384 715 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AL359073.1-201ENST00000448036 403 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AC005297.2-201ENST00000450430 606 ntBASIC4.22□□□□□ -1.73
BDNFP23560 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC4.22□□□□□ -1.73
BDNFP23560 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms