Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC016597.2-201ENST00000613256 341 ntBASIC3.27□□□□□ -1.89
SDC1P18827 AL121772.2-201ENST00000614331 297 ntBASIC3.27□□□□□ -1.89
SDC1P18827 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 OR4G3P-201ENST00000633500 913 ntBASIC3.27□□□□□ -1.89
SDC1P18827 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.27□□□□□ -1.89
SDC1P18827 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.27□□□□□ -1.89
SDC1P18827 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.26□□□□□ -1.89
SDC1P18827 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 RIOK3P1-201ENST00000418778 1528 ntBASIC3.26□□□□□ -1.89
SDC1P18827 ZNF734P-201ENST00000419494 1534 ntBASIC3.26□□□□□ -1.89
SDC1P18827 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 RNU1-75P-201ENST00000347264 129 ntBASIC3.26□□□□□ -1.89
SDC1P18827 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
SDC1P18827 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC1P18827 EI24P2-201ENST00000397776 1076 ntBASIC3.26□□□□□ -1.89
SDC1P18827 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 RPL23AP47-201ENST00000408017 460 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC126124.2-201ENST00000413542 321 ntBASIC3.26□□□□□ -1.89
SDC1P18827 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.26□□□□□ -1.89
SDC1P18827 AL356968.1-201ENST00000416622 474 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC007435.1-201ENST00000421086 415 ntBASIC3.26□□□□□ -1.89
SDC1P18827 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC1P18827 RPL7P44-201ENST00000424827 742 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AL035410.1-201ENST00000427409 427 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC1P18827 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.26□□□□□ -1.89
SDC1P18827 NANOGP2-201ENST00000435391 727 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.26□□□□□ -1.89
SDC1P18827 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.26□□□□□ -1.89
SDC1P18827 RPL23AP16-201ENST00000441715 421 ntBASIC3.26□□□□□ -1.89
SDC1P18827 RRM2P4-201ENST00000441721 562 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC008264.1-201ENST00000447612 367 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AL031313.1-201ENST00000448435 256 ntBASIC3.26□□□□□ -1.89
SDC1P18827 TRBV26-201ENST00000456572 344 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC1P18827 RPL23AP62-201ENST00000463396 453 ntBASIC3.26□□□□□ -1.89
SDC1P18827 ACTR3P3-201ENST00000480448 893 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC1P18827 OR5H5P-201ENST00000503164 928 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC1P18827 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC1P18827 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC1P18827 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.26□□□□□ -1.89
SDC1P18827 ZNF705CP-201ENST00000530515 889 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.26□□□□□ -1.89
SDC1P18827 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC1P18827 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.26□□□□□ -1.89
SDC1P18827 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.26□□□□□ -1.89
SDC1P18827 AC006270.2-201ENST00000578523 652 ntBASIC3.26□□□□□ -1.89
SDC1P18827 MIR4697-201ENST00000582977 78 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC015688.2-201ENST00000584523 262 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC113368.1-201ENST00000603736 382 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC069545.1-201ENST00000605671 358 ntBASIC3.26□□□□□ -1.89
SDC1P18827 AC090116.1-201ENST00000615679 446 ntBASIC3.26□□□□□ -1.89
SDC1P18827 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC1P18827 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC1P18827 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC1P18827 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC1P18827 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC1P18827 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
SDC1P18827 AL645937.1-201ENST00000641739 1652 ntBASIC3.26□□□□□ -1.89
SDC1P18827 ZNF37BP-203ENST00000452306 1352 ntBASIC3.25□□□□□ -1.89
SDC1P18827 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SDC1P18827 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SDC1P18827 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SDC1P18827 SEPT7P7-201ENST00000420492 1301 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC106754.1-201ENST00000562632 1513 ntBASIC3.25□□□□□ -1.89
SDC1P18827 RNA5SP124-201ENST00000362739 110 ntBASIC3.25□□□□□ -1.89
SDC1P18827 RNA5SP197-201ENST00000363357 119 ntBASIC3.25□□□□□ -1.89
SDC1P18827 RNA5SP479-201ENST00000364858 117 ntBASIC3.25□□□□□ -1.89
SDC1P18827 RNA5SP167-201ENST00000365461 116 ntBASIC3.25□□□□□ -1.89
SDC1P18827 RNU4-22P-201ENST00000411058 166 ntBASIC3.25□□□□□ -1.89
SDC1P18827 CYCSP19-201ENST00000411715 316 ntBASIC3.25□□□□□ -1.89
SDC1P18827 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.25□□□□□ -1.89
SDC1P18827 MTCO2P8-201ENST00000412213 658 ntBASIC3.25□□□□□ -1.89
SDC1P18827 CRYBB2P1-203ENST00000415709 538 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.25□□□□□ -1.89
SDC1P18827 MTCYBP24-201ENST00000420387 1106 ntBASIC3.25□□□□□ -1.89
SDC1P18827 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC1P18827 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.25□□□□□ -1.89
SDC1P18827 ATP5JP1-201ENST00000431631 322 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC1P18827 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.25□□□□□ -1.89
SDC1P18827 AL009048.1-201ENST00000450437 298 ntBASIC3.25□□□□□ -1.89
SDC1P18827 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
SDC1P18827 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC1P18827 HMGN2P7-201ENST00000456186 273 ntBASIC3.25□□□□□ -1.89
SDC1P18827 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.25□□□□□ -1.89
SDC1P18827 AC078817.1-201ENST00000492623 435 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AP001086.1-201ENST00000494882 321 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC1P18827 PRELID3BP5-201ENST00000508612 460 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms