Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 GNG5P1-201ENST00000255500 204 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 RNU6-1066P-201ENST00000363573 105 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 RNU1-43P-201ENST00000365052 165 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 RNU6-225P-201ENST00000384613 103 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 VN1R8P-201ENST00000407739 893 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AL450338.1-201ENST00000407987 512 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AC114482.1-201ENST00000418010 247 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 MTCO2P27-201ENST00000420740 428 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AL139148.1-201ENST00000427122 680 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 RPL23AP16-201ENST00000441715 421 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 MRPS17P3-201ENST00000465453 385 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AC009127.1-201ENST00000467090 155 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 KLHL2P1-201ENST00000508691 521 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 RPS27AP18-201ENST00000515536 459 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 MTCO2P24-201ENST00000515611 426 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 DEFB131D-201ENST00000526803 184 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 SLC2A13P1-201ENST00000531560 322 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AL109766.1-201ENST00000555080 552 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 SUB1P2-201ENST00000556401 297 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 MIR4742-201ENST00000581069 85 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 DPPA3P3-201ENST00000603842 430 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 IMMP1LP3-201ENST00000604197 224 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AL512329.2-201ENST00000607350 548 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 BTBD10P1-201ENST00000549824 1352 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 AC139713.2-215ENST00000641428 5037 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 MAPK10-320ENST00000641462 6696 ntBASIC5.77□□□□□ -1.49
CCDC39Q9UFE4 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 MTCO1P12-201ENST00000414273 1543 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 SNORA17.1-201ENST00000362945 126 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 CUBN-201ENST00000377823 705 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 SNORA69-201ENST00000383895 132 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 SNORA2.3-201ENST00000383920 135 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 RNU6-1106P-201ENST00000390845 107 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 MIR1286-201ENST00000408112 78 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 RNU6-847P-201ENST00000411115 108 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 MRPL50P2-201ENST00000416821 482 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 BEND7P1-201ENST00000422058 457 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AL589872.1-201ENST00000426602 288 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 CEACAMP4-201ENST00000457676 421 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 RNU7-27P-201ENST00000459281 62 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 RPS27AP17-201ENST00000463344 455 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC112204.1-201ENST00000502591 103 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC006390.1-201ENST00000508068 283 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 231.5 ms