Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
VPS13AQ96RL7 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 RNU1-17P-201ENST00000363022 152 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 Y_RNA.112-201ENST00000363250 102 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 RN7SKP44-201ENST00000363602 316 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AL022099.1-201ENST00000604551 712 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 EI24P2-201ENST00000397776 1076 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 MTCYBP28-201ENST00000566728 1132 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 LINC00901.1-201ENST00000617252 152 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 MIR378A-201ENST00000362177 66 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 SPA17P1-201ENST00000416656 452 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AC127526.1-201ENST00000417526 366 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AC026464.5-201ENST00000562497 722 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AP005136.1-201ENST00000579765 429 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AC010338.1-201ENST00000621823 717 ntBASIC2.39□□□□□ -2.03
VPS13AQ96RL7 AP000526.1-201ENST00000603308 1388 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 AC108667.1-201ENST00000428618 249 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 IGKV2D-23-201ENST00000518179 286 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 FAM60DP-201ENST00000524174 632 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 AC117529.2-201ENST00000512159 2068 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 AC097714.1-201ENST00000511272 1647 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 SPATA2P1-201ENST00000431223 2055 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 Z98941.1-201ENST00000407764 100 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 RNU6-1140P-201ENST00000410517 106 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 RN7SL75P-201ENST00000461926 281 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 AP003385.6-201ENST00000531603 374 ntBASIC2.38□□□□□ -2.03
VPS13AQ96RL7 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
VPS13AQ96RL7 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 AL512646.1-201ENST00000269395 1077 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 RNU6-661P-201ENST00000362409 107 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 RNA5SP274-201ENST00000410484 108 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 RNU6-321P-201ENST00000410912 106 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 RN7SKP140-201ENST00000411196 284 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 RNA5SP107-201ENST00000411358 122 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 RNA5SP270-201ENST00000411361 118 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 RPL23AP42-201ENST00000471152 471 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 AL136964.1-201ENST00000622038 2990 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 AL591416.1-201ENST00000404015 867 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 USP9YP20-201ENST00000419224 558 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 MIR613-201ENST00000385248 95 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 Z82205.1-201ENST00000428456 297 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 TRBV26-201ENST00000456572 344 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 NIPA2P2-201ENST00000496376 1083 ntBASIC2.37□□□□□ -2.03
VPS13AQ96RL7 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS13AQ96RL7 OR52B1P-201ENST00000316506 909 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS13AQ96RL7 RNU2-2P-201ENST00000410396 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC2.36□□□□□ -2.03
VPS13AQ96RL7 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS13AQ96RL7 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS13AQ96RL7 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS13AQ96RL7 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.15-201ENST00000611544 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.16-201ENST00000613119 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.12-201ENST00000613778 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.20-201ENST00000613956 192 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.9-201ENST00000615427 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.11-201ENST00000616345 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.2-201ENST00000616535 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.3-201ENST00000617785 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.19-201ENST00000618602 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 RNU2-1-201ENST00000618664 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.6-201ENST00000619225 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.5-201ENST00000619465 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 U2.10-201ENST00000620268 191 ntBASIC2.36□□□□□ -2.03
VPS13AQ96RL7 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms