Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 TOMM20P1-201ENST00000534518 427 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 APOOP3-201ENST00000536787 586 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC079905.1-201ENST00000549280 475 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 MIR4776-2-201ENST00000580204 80 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 SNORD84-203ENST00000584275 78 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 PRPF19P1-201ENST00000584766 898 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AL499605.1-201ENST00000604628 403 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AL360085.1-201ENST00000604713 532 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AL136131.3-201ENST00000607600 188 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC022893.3-201ENST00000607665 437 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 MIR6861-201ENST00000618657 64 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 RN7SKP128-201ENST00000364270 303 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 RNA5SP235-201ENST00000365411 114 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 RNU6-629P-201ENST00000384061 103 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MIR559-201ENST00000385188 96 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 RNY4P36-201ENST00000391116 96 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AL031985.1-201ENST00000392713 418 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MIR1282-201ENST00000408865 101 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 OR6E1P-201ENST00000414424 923 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AL139396.1-201ENST00000421137 167 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 H2AFZP5-201ENST00000446960 382 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC004129.2-201ENST00000457229 287 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MIR2117-201ENST00000516780 80 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 OTX2-203ENST00000554559 715 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC007151.1-201ENST00000572774 483 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC006115.2-201ENST00000596823 202 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC174048.1-201ENST00000603389 144 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MIR6793-201ENST00000612376 63 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AL139099.4-201ENST00000614802 114 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC015967.1-201ENST00000619893 476 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AL353748.2-201ENST00000622148 471 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AL445363.3-201ENST00000623080 671 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MIR4275-201ENST00000636486 87 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC140Q96MF4 HSPA8P4-201ENST00000511877 1920 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 MTCO1P12-201ENST00000414273 1543 ntBASIC4.56□□□□□ -1.68
CCDC140Q96MF4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC083837.1-201ENST00000565297 2994 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL359955.1-201ENST00000455242 3275 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms