Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC069209.1-201ENST00000619282 651 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC009318.4-201ENST00000620496 486 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC040168.1-201ENST00000623594 991 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 SNORA50A-202ENST00000629536 136 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 ZNF663P-202ENST00000641770 1131 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS39Q96JC1 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS39Q96JC1 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 SNORD82-201ENST00000365530 70 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 OR1L1-202ENST00000373686 1083 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 U6.112-201ENST00000384129 70 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 SNORA48.8-201ENST00000391324 134 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 MCTS2P-201ENST00000394552 546 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AL035405.1-201ENST00000400795 710 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AL355143.1-201ENST00000407101 841 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC099677.1-201ENST00000420575 175 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 GLRXP1-201ENST00000423261 334 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 SNRPEP4-201ENST00000435815 279 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AL050341.1-201ENST00000447743 313 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 OR51B8P-201ENST00000449892 769 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 MRPS31P2-201ENST00000451581 518 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 RPL23AP14-201ENST00000468281 468 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 HMGB1P25-201ENST00000468402 607 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 GAPDHP39-201ENST00000481866 979 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 NPM1P41-201ENST00000512920 831 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 SNORA31.8-201ENST00000516327 108 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AL139174.1-201ENST00000531489 886 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC068339.2-201ENST00000534395 618 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC084824.1-201ENST00000550917 1005 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 HSPE1P5-201ENST00000561489 272 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC104072.1-201ENST00000568817 668 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC092628.2-201ENST00000622492 339 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AP000943.4-201ENST00000622912 357 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 AC103798.2-201ENST00000624292 632 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS39Q96JC1 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS39Q96JC1 ZNF807-201ENST00000328088 1707 ntBASIC3.56□□□□□ -1.84
VPS39Q96JC1 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS39Q96JC1 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS39Q96JC1 AL049780.3-201ENST00000624612 1583 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS39Q96JC1 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS39Q96JC1 RN7SKP280-201ENST00000364196 304 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 MIR184-201ENST00000384962 84 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 AL139098.1-201ENST00000407291 389 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC068533.1-201ENST00000418542 415 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC013262.1-201ENST00000426710 252 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC000041.1-201ENST00000439655 175 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 MTND2P19-201ENST00000449129 1012 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 RNU7-140P-201ENST00000459546 60 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 RN7SL594P-201ENST00000470590 287 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 HMGN1P11-201ENST00000508668 303 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms