Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC108078.3-201ENST00000502633 489 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC093767.1-201ENST00000504523 156 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AP003355.1-201ENST00000518956 587 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 OR7E13P-201ENST00000526052 910 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC019227.1-201ENST00000526902 510 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC011611.1-201ENST00000552179 197 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 ZNF971P-201ENST00000562068 1249 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC090330.1-201ENST00000588646 764 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AP003973.1-201ENST00000604639 691 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC068880.4-201ENST00000623082 495 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 RNU1-89P-201ENST00000384592 164 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 RN7SKP56-201ENST00000410513 331 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AL136133.1-201ENST00000413694 376 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 MTCYBP32-201ENST00000427945 1084 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 NEK4P1-201ENST00000433383 879 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 U3.44-201ENST00000458938 192 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 PABPC1P3-201ENST00000469174 459 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 RN7SL807P-201ENST00000470923 297 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC069499.1-201ENST00000489433 509 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 NIPA2P2-201ENST00000496376 1083 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC084024.2-201ENST00000503480 791 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 MTCO3P27-201ENST00000514397 196 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 SUMO2P20-201ENST00000520803 283 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC008011.1-201ENST00000545989 227 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AL121766.1-201ENST00000547436 487 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 NCAPGP2-201ENST00000557911 754 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 SNORD84-203ENST00000584275 78 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 VN1R87P-201ENST00000596706 487 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AL163642.2-201ENST00000604722 1019 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 MIR8058-201ENST00000615737 89 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 XIST_intron.1-201ENST00000619444 68 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC018755.4-201ENST00000619715 454 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AF117829.1-206ENST00000621883 3802 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 AC040168.1-201ENST00000623594 991 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 MTND4P34-201ENST00000572715 1371 ntBASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.7□□□□□ -1.82
HDDC3Q8N4P3 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 RNA5SP322-201ENST00000363617 119 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 SNORA38.1-201ENST00000364172 131 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 HLFP1-201ENST00000402375 499 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AL024474.1-201ENST00000404655 591 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 MTHFD2P2-201ENST00000407725 247 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AMD1P2-201ENST00000412936 992 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC245054.1-201ENST00000420944 258 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 HIGD1AP12-201ENST00000427832 281 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC241584.1-201ENST00000438469 1241 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC098824.1-201ENST00000453565 980 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms