Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.09□□□□□ -1.44
NPAS3Q8IXF0 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
NPAS3Q8IXF0 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
NPAS3Q8IXF0 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 MAPK10-261ENST00000641050 3109 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 U3.7-201ENST00000363668 216 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 RNU4-42P-201ENST00000364738 142 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 Y_RNA.418-201ENST00000384029 102 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 RNU6-171P-201ENST00000384354 107 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 MIR937-201ENST00000401271 86 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 DPPA2P3-201ENST00000411853 655 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 RPS17P17-201ENST00000419392 409 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 RPL23AP25-201ENST00000430973 463 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC091286.1-201ENST00000431233 461 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 RPS24P8-201ENST00000431490 402 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 OR4C10P-201ENST00000434991 931 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 RPL23AP43-201ENST00000446445 471 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 BTF3P6-201ENST00000448054 499 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 FRG2FP-204ENST00000453982 852 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 RNU7-169P-201ENST00000459456 61 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC026979.1-201ENST00000492525 396 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC093852.1-201ENST00000503587 266 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 SCARNA6.1-201ENST00000516989 238 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 IGKV2-38-201ENST00000517443 247 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 SARNP-203ENST00000552080 726 ntTSL 2 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 MIR1269B-201ENST00000580405 75 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC005899.2-201ENST00000584353 90 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC133644.2-201ENST00000608142 540 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AC123768.4-201ENST00000616244 701 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 AL159153.1-201ENST00000619688 317 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 SNX18P3-202ENST00000565670 1750 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 DHX40P1-201ENST00000588725 1412 ntBASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NPAS3Q8IXF0 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AC009313.2-201ENST00000417893 1941 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AC046144.1-201ENST00000478559 1853 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 SRRM1P3-201ENST00000426911 2678 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 SPATA2P1-201ENST00000431223 2055 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 LINC02019-201ENST00000608605 2060 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 MIR335-201ENST00000362173 94 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 RNU6-842P-201ENST00000384269 107 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 RNA5SP251-201ENST00000410614 137 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 SYF2P2-201ENST00000417620 583 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AC140479.3-201ENST00000418944 1126 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AL390119.1-201ENST00000440329 312 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AC004980.3-201ENST00000447046 365 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 SNORD5.1-201ENST00000458800 75 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AC006539.1-201ENST00000481419 501 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 UBA52P7-201ENST00000486088 380 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AC009120.1-201ENST00000493458 473 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 SERF1AP1-201ENST00000514575 187 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 RNU6-1332P-201ENST00000516666 104 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 RAB9BP1-201ENST00000519581 626 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 HIGD1AP6-201ENST00000521833 279 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 SUB1P3-201ENST00000564581 315 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 MIR4260-201ENST00000583107 67 ntBASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC6.07□□□□□ -1.44
NPAS3Q8IXF0 AL355877.2-201ENST00000603670 358 ntBASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms