Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 OR14L1P-202ENST00000641545 3009 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 SNORA62-201ENST00000365493 153 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 RNU5A-6P-201ENST00000384136 116 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 RNU6-533P-201ENST00000384144 107 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 MIR195-201ENST00000385194 87 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 ENSAP1-201ENST00000392855 326 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 VDAC1P9-201ENST00000412766 841 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 RAD23BP1-201ENST00000421404 1227 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 DNAJC19P4-201ENST00000440115 345 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 PGBD4P3-201ENST00000440731 581 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 MTCO2P3-201ENST00000442543 421 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 TPT1P12-201ENST00000448968 492 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 HMGB3P21-201ENST00000452483 547 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 PLGLA-201ENST00000465668 449 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC108022.1-201ENST00000493466 478 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC021146.3-201ENST00000511911 260 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC009063.1-201ENST00000563342 702 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC136619.2-201ENST00000563361 631 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AL022154.1-201ENST00000604698 785 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC103710.1-201ENST00000610003 901 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC009704.2-201ENST00000618739 483 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AL731566.2-201ENST00000618971 317 ntBASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.41□□□□□ -1.7
PTCHD3Q3KNS1 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
PTCHD3Q3KNS1 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
PTCHD3Q3KNS1 AC005832.2-201ENST00000538921 1430 ntBASIC4.4□□□□□ -1.7
PTCHD3Q3KNS1 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.4□□□□□ -1.7
PTCHD3Q3KNS1 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
PTCHD3Q3KNS1 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.4□□□□□ -1.7
PTCHD3Q3KNS1 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
PTCHD3Q3KNS1 AL161781.1-201ENST00000354277 403 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 RNA5SP447-201ENST00000363749 119 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 RNU6-730P-201ENST00000383954 104 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 EIF4A1P3-201ENST00000411521 244 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 HMGB3P23-201ENST00000414981 585 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 MTATP6P27-201ENST00000416987 621 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 MTND3P21-201ENST00000433774 331 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 RPL23AP93-201ENST00000440847 484 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AL022238.1-201ENST00000442557 355 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 MTND1P1-201ENST00000445453 368 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AP000542.1-201ENST00000448473 371 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 BTF3P5-201ENST00000457252 467 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC022034.3-201ENST00000471393 478 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC087312.1-201ENST00000471411 480 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC026979.1-201ENST00000492525 396 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC034222.1-201ENST00000494052 532 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 TXNP6-201ENST00000510190 310 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC093677.1-201ENST00000514414 678 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 OR5M7P-201ENST00000526140 972 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 RPL21P7-201ENST00000557463 483 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 RPL7P50-201ENST00000600588 727 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AL359999.1-201ENST00000604513 294 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC108747.1-201ENST00000609508 535 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms