Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 AC103810.6-201ENST00000606708 136 ntBASIC3.09□□□□□ -1.92
SCN9AQ15858 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
SCN9AQ15858 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SCN9AQ15858 MIR27B-201ENST00000385129 97 ntBASIC3.08□□□□□ -1.92
SCN9AQ15858 AL451074.5-201ENST00000415894 435 ntBASIC3.08□□□□□ -1.92
SCN9AQ15858 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.08□□□□□ -1.92
SCN9AQ15858 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SCN9AQ15858 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.08□□□□□ -1.92
SCN9AQ15858 AC021205.1-201ENST00000468797 348 ntBASIC3.08□□□□□ -1.92
SCN9AQ15858 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.08□□□□□ -1.92
SCN9AQ15858 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.08□□□□□ -1.92
SCN9AQ15858 AC090312.2-201ENST00000582687 378 ntBASIC3.08□□□□□ -1.92
SCN9AQ15858 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.08□□□□□ -1.92
SCN9AQ15858 AC083760.1-201ENST00000589621 670 ntBASIC3.08□□□□□ -1.92
SCN9AQ15858 AC010338.1-201ENST00000621823 717 ntBASIC3.08□□□□□ -1.92
SCN9AQ15858 AC067852.7-201ENST00000623270 535 ntBASIC3.08□□□□□ -1.92
SCN9AQ15858 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.08□□□□□ -1.92
SCN9AQ15858 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.08□□□□□ -1.92
SCN9AQ15858 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
SCN9AQ15858 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.07□□□□□ -1.92
SCN9AQ15858 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
SCN9AQ15858 SNORD6-201ENST00000365444 73 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC3.07□□□□□ -1.92
SCN9AQ15858 UBE2D3P1-201ENST00000436669 444 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.07□□□□□ -1.92
SCN9AQ15858 AC092013.1-201ENST00000438795 332 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AC078785.3-201ENST00000476607 425 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 POU5F1P7-201ENST00000508759 541 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 MIR4648-201ENST00000580107 72 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AC010620.2-201ENST00000600135 313 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AC004241.3-201ENST00000611728 517 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AL356274.1-201ENST00000617064 410 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
SCN9AQ15858 AC016717.2-201ENST00000609089 5141 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.07□□□□□ -1.92
SCN9AQ15858 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.07□□□□□ -1.92
SCN9AQ15858 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.07□□□□□ -1.92
SCN9AQ15858 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SCN9AQ15858 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.07□□□□□ -1.92
SCN9AQ15858 AC008716.1-201ENST00000511084 513 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 TRAV37-201ENST00000553906 342 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AL355836.1-201ENST00000555951 870 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.07□□□□□ -1.92
SCN9AQ15858 MIR3605-201ENST00000583214 100 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.07□□□□□ -1.92
SCN9AQ15858 AC241585.2-209ENST00000638217 143 ntBASIC3.07□□□□□ -1.92
SCN9AQ15858 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.06□□□□□ -1.92
SCN9AQ15858 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.06□□□□□ -1.92
SCN9AQ15858 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.06□□□□□ -1.92
SCN9AQ15858 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.06□□□□□ -1.92
SCN9AQ15858 RNU6-146P-201ENST00000384602 108 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 AL359511.1-201ENST00000402970 211 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 RNA5SP239-201ENST00000410218 129 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 PTP4A1P5-201ENST00000420305 455 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 OR2B8P-201ENST00000432841 938 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 UBL5P3-201ENST00000475112 231 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 AC017007.3-201ENST00000479865 435 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 RNU6-237P-201ENST00000515985 71 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 SNORD116-26-201ENST00000516006 96 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 AC009977.1-201ENST00000586015 570 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 AC008277.2-201ENST00000605196 797 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 AC017076.1-201ENST00000607613 578 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 MTND5P19-201ENST00000424872 1794 ntBASIC3.06□□□□□ -1.92
SCN9AQ15858 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.05□□□□□ -1.92
SCN9AQ15858 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.05□□□□□ -1.92
SCN9AQ15858 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.05□□□□□ -1.92
SCN9AQ15858 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SCN9AQ15858 AC008280.2-201ENST00000455473 307 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 AC025260.1-201ENST00000548858 430 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 AC022069.1-201ENST00000582910 658 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SCN9AQ15858 AP006248.2-201ENST00000623309 592 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.05□□□□□ -1.92
SCN9AQ15858 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
SCN9AQ15858 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SCN9AQ15858 MIR504-201ENST00000385065 83 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 RNU4-26P-201ENST00000410270 107 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 RNU4-53P-201ENST00000410828 140 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 HMGN2P3-201ENST00000433603 273 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 HMGN2P5-201ENST00000436882 273 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 HMGN1P5-201ENST00000448591 263 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 IFNWP4-201ENST00000453148 294 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.05□□□□□ -1.92
SCN9AQ15858 AC118282.1-201ENST00000506408 765 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 AC119751.1-201ENST00000513357 765 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.05□□□□□ -1.92
SCN9AQ15858 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.05□□□□□ -1.92
SCN9AQ15858 HIGD1AP10-201ENST00000527837 282 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.05□□□□□ -1.92
SCN9AQ15858 AP000873.5-201ENST00000533906 236 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.05□□□□□ -1.92
SCN9AQ15858 AC128657.1-201ENST00000549459 145 ntBASIC3.05□□□□□ -1.92
SCN9AQ15858 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.05□□□□□ -1.92
SCN9AQ15858 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.05□□□□□ -1.92
SCN9AQ15858 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.05□□□□□ -1.92
SCN9AQ15858 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
SCN9AQ15858 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 145.2 ms