Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA1P55317 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA1P55317 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA1P55317 OR5T3-201ENST00000303059 1023 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 SNORA38.1-201ENST00000364172 131 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA1P55317 SNORA48.5-201ENST00000391143 135 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA1P55317 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA1P55317 MTCO3P4-201ENST00000419236 787 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA1P55317 DPPA2P1-201ENST00000428060 556 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 ELOCP6-201ENST00000429066 328 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 MTND4LP14-201ENST00000429447 288 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA1P55317 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA1P55317 ELOCP12-201ENST00000458706 328 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC091179.1-201ENST00000461606 579 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 RPS29P26-201ENST00000477483 171 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 RN7SL297P-201ENST00000483161 293 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 RPL5P23-201ENST00000496040 868 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA1P55317 AC111193.1-201ENST00000504097 155 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 SCGB1D5P-201ENST00000515134 247 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 RPL12P22-201ENST00000519073 490 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA1P55317 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.72□□□□□ -1.97
FOXA1P55317 HPRT1P3-201ENST00000539521 576 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC093014.1-201ENST00000548926 724 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.72□□□□□ -1.97
FOXA1P55317 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA1P55317 AP001180.3-201ENST00000582221 145 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 CBX3P2-202ENST00000583365 535 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC067852.4-201ENST00000590314 478 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA1P55317 AF131215.7-201ENST00000602443 707 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AC020658.4-201ENST00000613987 684 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 AP001002.2-201ENST00000625137 386 ntBASIC2.72□□□□□ -1.97
FOXA1P55317 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC2.72□□□□□ -1.97
FOXA1P55317 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA1P55317 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.71□□□□□ -1.98
FOXA1P55317 AC110774.1-201ENST00000623567 2018 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA1P55317 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA1P55317 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA1P55317 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA1P55317 AL590290.1-201ENST00000405336 380 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 RNU2-6P-201ENST00000411404 190 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 RPS20P25-201ENST00000412447 352 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA1P55317 AL031736.2-201ENST00000426573 787 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 AL512649.1-201ENST00000428997 581 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 ELOCP11-201ENST00000436690 332 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 MUPP-201ENST00000438111 566 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 AL513043.1-201ENST00000439124 535 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 ELOCP16-201ENST00000444494 332 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 AL590399.6-201ENST00000446396 307 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 MRPL50P4-201ENST00000446432 475 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA1P55317 AC104687.1-201ENST00000485829 412 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 OR5H4P-201ENST00000510851 923 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 RN7SKP82-201ENST00000516786 223 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.71□□□□□ -1.98
FOXA1P55317 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA1P55317 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA1P55317 AC023043.3-201ENST00000593113 385 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 AC012493.2-201ENST00000595083 291 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA1P55317 AC100814.1-201ENST00000606963 623 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA1P55317 AC025016.1-201ENST00000616746 682 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 FAM35CP-201ENST00000554755 2470 ntBASIC2.71□□□□□ -1.98
FOXA1P55317 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA1P55317 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA1P55317 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
FOXA1P55317 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA1P55317 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA1P55317 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
FOXA1P55317 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA1P55317 AC002546.1-201ENST00000588041 2504 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 MTND5P7-201ENST00000413558 1798 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 MIR422A-201ENST00000362286 90 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA1P55317 AP000567.1-201ENST00000406413 156 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA1P55317 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA1P55317 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA1P55317 MTND4P24-201ENST00000424002 397 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 CR848007.2-201ENST00000424918 787 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 FO393419.3-201ENST00000428741 282 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 AC127537.2-201ENST00000439258 465 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA1P55317 TPTE2P6-202ENST00000445572 1007 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA1P55317 SLC31A1P1-201ENST00000451221 567 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 AC089999.1-201ENST00000460336 374 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 AP001025.2-201ENST00000490908 477 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 RPL30P11-201ENST00000495304 339 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.7□□□□□ -1.98
FOXA1P55317 SNORA9.3-201ENST00000516383 129 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms