Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RPS15AP40-201ENST00000419621 391 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 OR4K11P-201ENST00000431829 904 ntBASIC5.56□□□□□ -1.52
LIG3P49916 MTND6P18-201ENST00000439477 513 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 RAC1P7-201ENST00000445367 377 ntBASIC5.56□□□□□ -1.52
LIG3P49916 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG3P49916 AC090804.1-201ENST00000448870 490 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC010733.1-201ENST00000451515 401 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AL513533.1-201ENST00000453728 415 ntBASIC5.56□□□□□ -1.52
LIG3P49916 GMFBP1-201ENST00000467831 427 ntBASIC5.56□□□□□ -1.52
LIG3P49916 RN7SL51P-201ENST00000468230 285 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 AC026427.2-201ENST00000506228 536 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC103851.1-201ENST00000506833 274 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC117522.3-201ENST00000507974 584 ntBASIC5.56□□□□□ -1.52
LIG3P49916 SNORD27.1-201ENST00000516319 72 ntBASIC5.56□□□□□ -1.52
LIG3P49916 SCARNA21.2-201ENST00000516600 166 ntBASIC5.56□□□□□ -1.52
LIG3P49916 RN7SKP99-201ENST00000517028 307 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG3P49916 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.56□□□□□ -1.52
LIG3P49916 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 OR4K8P-201ENST00000578842 1048 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG3P49916 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.56□□□□□ -1.52
LIG3P49916 AL161729.3-201ENST00000603533 673 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC010591.1-201ENST00000603941 649 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AL512624.1-201ENST00000613638 469 ntBASIC5.56□□□□□ -1.52
LIG3P49916 MIR6826-201ENST00000617808 98 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC079684.1-201ENST00000621405 437 ntBASIC5.56□□□□□ -1.52
LIG3P49916 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.56□□□□□ -1.52
LIG3P49916 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG3P49916 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
LIG3P49916 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 PHKBP1-201ENST00000450951 1951 ntBASIC5.56□□□□□ -1.52
LIG3P49916 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.56□□□□□ -1.52
LIG3P49916 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
LIG3P49916 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG3P49916 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 AC235565.1-201ENST00000456962 1325 ntBASIC5.55□□□□□ -1.52
LIG3P49916 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG3P49916 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
LIG3P49916 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
LIG3P49916 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 FRG1CP-201ENST00000358464 769 ntBASIC5.55□□□□□ -1.52
LIG3P49916 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LIG3P49916 Y_RNA.58-201ENST00000362807 102 ntBASIC5.55□□□□□ -1.52
LIG3P49916 RN7SKP162-201ENST00000363605 345 ntBASIC5.55□□□□□ -1.52
LIG3P49916 Y_RNA.154-201ENST00000363624 102 ntBASIC5.55□□□□□ -1.52
LIG3P49916 RNVU1-3-201ENST00000364313 161 ntBASIC5.55□□□□□ -1.52
LIG3P49916 RNY3P1-201ENST00000365085 102 ntBASIC5.55□□□□□ -1.52
LIG3P49916 RNY3-201ENST00000365484 102 ntBASIC5.55□□□□□ -1.52
LIG3P49916 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.55□□□□□ -1.52
LIG3P49916 Y_RNA.431-201ENST00000384086 102 ntBASIC5.55□□□□□ -1.52
LIG3P49916 Y_RNA.490-201ENST00000384413 102 ntBASIC5.55□□□□□ -1.52
LIG3P49916 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 OR2AH1P-201ENST00000425717 928 ntBASIC5.55□□□□□ -1.52
LIG3P49916 RPL7AP49-201ENST00000429522 581 ntBASIC5.55□□□□□ -1.52
LIG3P49916 EZH2P1-201ENST00000431167 291 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AL591438.1-201ENST00000433508 581 ntBASIC5.55□□□□□ -1.52
LIG3P49916 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.55□□□□□ -1.52
LIG3P49916 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG3P49916 SPRYD7P1-201ENST00000443861 570 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC073415.1-201ENST00000449240 153 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG3P49916 RPS20P21-201ENST00000466859 343 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AL133445.1-201ENST00000467051 452 ntBASIC5.55□□□□□ -1.52
LIG3P49916 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG3P49916 COX7A2P2-201ENST00000505291 250 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC105417.1-201ENST00000514691 285 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG3P49916 BX510359.5-201ENST00000515651 304 ntBASIC5.55□□□□□ -1.52
LIG3P49916 IGLVIV-53-201ENST00000520107 367 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC107953.1-201ENST00000522216 297 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG3P49916 PSMA2P1-201ENST00000526365 646 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.55□□□□□ -1.52
LIG3P49916 HPRT1P3-201ENST00000539521 576 ntBASIC5.55□□□□□ -1.52
LIG3P49916 BNIP3P6-201ENST00000549284 499 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG3P49916 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.55□□□□□ -1.52
LIG3P49916 MTCO3P13-201ENST00000577757 781 ntBASIC5.55□□□□□ -1.52
LIG3P49916 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG3P49916 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG3P49916 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG3P49916 RN7SL435P-201ENST00000584418 282 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG3P49916 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms