Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.26□□□□□ -1.89
SHMT2P34897 RN7SL601P-201ENST00000471221 293 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT2P34897 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.26□□□□□ -1.89
SHMT2P34897 AC114967.1-201ENST00000504890 259 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT2P34897 TXNP6-201ENST00000510190 310 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 AC074250.1-201ENST00000511117 192 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 AC112198.4-201ENST00000515450 351 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 FABP5P12-201ENST00000515543 389 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 RNU6-488P-201ENST00000515918 99 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.26□□□□□ -1.89
SHMT2P34897 OR8L1P-201ENST00000534005 955 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.26□□□□□ -1.89
SHMT2P34897 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
SHMT2P34897 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.26□□□□□ -1.89
SHMT2P34897 NIFKP8-201ENST00000560500 874 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.26□□□□□ -1.89
SHMT2P34897 CCDC58P3-201ENST00000590792 430 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 AC018754.1-201ENST00000607486 925 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 AL356321.1-201ENST00000621360 228 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.26□□□□□ -1.89
SHMT2P34897 BX649567.1-201ENST00000642071 1134 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.26□□□□□ -1.89
SHMT2P34897 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT2P34897 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT2P34897 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT2P34897 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT2P34897 AL353746.1-201ENST00000566293 6881 ntBASIC3.26□□□□□ -1.89
SHMT2P34897 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT2P34897 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT2P34897 CR383658.2-201ENST00000547576 1525 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT2P34897 RNA5SP295-201ENST00000362655 121 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 SNORD56.3-201ENST00000363507 71 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 SNORD46.1-201ENST00000364139 104 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 RNA5SP267-201ENST00000364893 126 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 RNU6-619P-201ENST00000365146 108 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 RNU6-444P-201ENST00000383988 108 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 RNU6-356P-201ENST00000384140 107 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 MIR16-1-201ENST00000385271 89 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 U3.19-201ENST00000390893 196 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 BTBD10P2-201ENST00000404779 676 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 RNA5SP44-201ENST00000410446 133 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT2P34897 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT2P34897 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT2P34897 AL158156.1-201ENST00000422509 473 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 RPL23AP82-202ENST00000427528 469 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT2P34897 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT2P34897 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT2P34897 RPS26P56-201ENST00000444468 240 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT2P34897 NAP1L1P3-201ENST00000462291 880 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT2P34897 CENPBD1P1-201ENST00000464061 469 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 RPS17P11-201ENST00000474297 293 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC087879.1-201ENST00000474343 374 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT2P34897 RPL21P13-201ENST00000488305 481 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT2P34897 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.25□□□□□ -1.89
SHMT2P34897 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT2P34897 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT2P34897 PTGES3P3-201ENST00000511479 482 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 SNORA64.4-201ENST00000516632 81 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC068657.1-201ENST00000520807 306 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT2P34897 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT2P34897 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT2P34897 MIR4504-201ENST00000577413 92 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 BPTFP1-201ENST00000579209 492 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC015917.1-201ENST00000579654 510 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC005412.1-201ENST00000580812 1049 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 YWHAQP7-201ENST00000603536 658 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT2P34897 AC253576.2-201ENST00000618815 580 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT2P34897 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT2P34897 MIR4496-201ENST00000635896 61 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT2P34897 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT2P34897 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT2P34897 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT2P34897 ELL2P4-201ENST00000446870 1376 ntBASIC3.25□□□□□ -1.89
SHMT2P34897 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.24□□□□□ -1.89
SHMT2P34897 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
SHMT2P34897 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SHMT2P34897 AC007496.3-201ENST00000624987 3443 ntBASIC3.24□□□□□ -1.89
SHMT2P34897 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SHMT2P34897 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SHMT2P34897 AL079305.1-201ENST00000623159 3008 ntBASIC3.24□□□□□ -1.89
SHMT2P34897 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SHMT2P34897 MIR148B-201ENST00000362252 99 ntBASIC3.24□□□□□ -1.89
SHMT2P34897 RNU5B-1-201ENST00000363286 116 ntBASIC3.24□□□□□ -1.89
SHMT2P34897 RNA5SP189-201ENST00000364920 115 ntBASIC3.24□□□□□ -1.89
SHMT2P34897 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.24□□□□□ -1.89
SHMT2P34897 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms