Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC013244.1-201ENST00000604279 193 ntBASIC5.88□□□□□ -1.47
LIG1P18858 AC113139.1-201ENST00000605049 239 ntBASIC5.88□□□□□ -1.47
LIG1P18858 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.88□□□□□ -1.47
LIG1P18858 AP005432.2-201ENST00000608162 586 ntBASIC5.88□□□□□ -1.47
LIG1P18858 uc_338.5-201ENST00000611839 155 ntBASIC5.88□□□□□ -1.47
LIG1P18858 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG1P18858 AC005858.4-201ENST00000623191 700 ntBASIC5.88□□□□□ -1.47
LIG1P18858 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG1P18858 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
LIG1P18858 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.88□□□□□ -1.47
LIG1P18858 SCARNA15-201ENST00000607520 4325 ntBASIC5.88□□□□□ -1.47
LIG1P18858 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG1P18858 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIG1P18858 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
LIG1P18858 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 RPL23P2-201ENST00000320371 421 ntBASIC5.87□□□□□ -1.47
LIG1P18858 RNA5SP90-201ENST00000364801 99 ntBASIC5.87□□□□□ -1.47
LIG1P18858 RNU6-738P-201ENST00000384531 106 ntBASIC5.87□□□□□ -1.47
LIG1P18858 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIG1P18858 AC068050.1-201ENST00000394891 380 ntBASIC5.87□□□□□ -1.47
LIG1P18858 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.87□□□□□ -1.47
LIG1P18858 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 AC013429.2-201ENST00000418798 781 ntBASIC5.87□□□□□ -1.47
LIG1P18858 NCOR1P3-201ENST00000420479 303 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AL592293.2-201ENST00000422292 996 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AL353678.1-201ENST00000422735 741 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIG1P18858 AC009965.2-201ENST00000425328 970 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AL139148.1-201ENST00000427122 680 ntBASIC5.87□□□□□ -1.47
LIG1P18858 OR2B7P-201ENST00000429302 934 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.87□□□□□ -1.47
LIG1P18858 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 RPL7P15-201ENST00000461190 712 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AC010301.1-201ENST00000473936 355 ntBASIC5.87□□□□□ -1.47
LIG1P18858 RN7SL799P-201ENST00000475891 298 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.87□□□□□ -1.47
LIG1P18858 RNA5SP401-201ENST00000515920 127 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AC104986.1-201ENST00000517978 436 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC5.87□□□□□ -1.47
LIG1P18858 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC5.87□□□□□ -1.47
LIG1P18858 OR10G5P-201ENST00000532733 358 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.87□□□□□ -1.47
LIG1P18858 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.87□□□□□ -1.47
LIG1P18858 AC009117.1-201ENST00000563948 554 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AC110743.1-201ENST00000584870 478 ntBASIC5.87□□□□□ -1.47
LIG1P18858 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
LIG1P18858 AC069307.1-201ENST00000602820 447 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.87□□□□□ -1.47
LIG1P18858 AC004853.1-201ENST00000604902 698 ntBASIC5.87□□□□□ -1.47
LIG1P18858 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 AC009237.17-201ENST00000618111 748 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AL603758.1-201ENST00000618654 241 ntBASIC5.87□□□□□ -1.47
LIG1P18858 RMST_7.1-201ENST00000621935 268 ntBASIC5.87□□□□□ -1.47
LIG1P18858 AC100810.6-201ENST00000638068 285 ntBASIC5.87□□□□□ -1.47
LIG1P18858 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG1P18858 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG1P18858 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG1P18858 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
LIG1P18858 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG1P18858 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
LIG1P18858 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG1P18858 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.86□□□□□ -1.47
LIG1P18858 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LIG1P18858 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG1P18858 AC092747.4-201ENST00000620519 1861 ntBASIC5.86□□□□□ -1.47
LIG1P18858 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LIG1P18858 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
LIG1P18858 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
LIG1P18858 RNU5E-1-201ENST00000362477 120 ntBASIC5.86□□□□□ -1.47
LIG1P18858 U3.3-201ENST00000362986 216 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AL162578.1-201ENST00000406202 378 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AC007738.1-201ENST00000413892 348 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.86□□□□□ -1.47
LIG1P18858 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG1P18858 EI24P4-201ENST00000423683 1078 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AC108075.1-201ENST00000424692 529 ntBASIC5.86□□□□□ -1.47
LIG1P18858 RPL35AP21-201ENST00000437667 333 ntBASIC5.86□□□□□ -1.47
LIG1P18858 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.86□□□□□ -1.47
LIG1P18858 FAM103A2P-201ENST00000444122 354 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AL163193.1-201ENST00000444895 788 ntBASIC5.86□□□□□ -1.47
LIG1P18858 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG1P18858 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG1P18858 AL356981.1-201ENST00000454879 684 ntBASIC5.86□□□□□ -1.47
LIG1P18858 RPL37P3-201ENST00000456825 293 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AC026410.2-201ENST00000460281 156 ntBASIC5.86□□□□□ -1.47
LIG1P18858 RPL7P19-201ENST00000469948 618 ntBASIC5.86□□□□□ -1.47
LIG1P18858 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC5.86□□□□□ -1.47
LIG1P18858 AC103851.1-201ENST00000506833 274 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.86□□□□□ -1.47
LIG1P18858 PCBP2P3-201ENST00000509726 843 ntBASIC5.86□□□□□ -1.47
LIG1P18858 SNORD60.2-201ENST00000516883 86 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AC105031.1-201ENST00000518550 476 ntBASIC5.86□□□□□ -1.47
LIG1P18858 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG1P18858 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms