Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC1.54□□□□□ -2.16
APOBP04114 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC1.54□□□□□ -2.16
APOBP04114 FAM60DP-201ENST00000524174 632 ntBASIC1.54□□□□□ -2.16
APOBP04114 TRAV37-201ENST00000553906 342 ntBASIC1.54□□□□□ -2.16
APOBP04114 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC1.54□□□□□ -2.16
APOBP04114 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC1.54□□□□□ -2.16
APOBP04114 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.54□□□□□ -2.16
APOBP04114 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC1.54□□□□□ -2.16
APOBP04114 WARS-244ENST00000627608 123 ntTSL 5 BASIC1.54□□□□□ -2.16
APOBP04114 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 AC026523.2-201ENST00000625039 7739 ntBASIC1.54□□□□□ -2.16
APOBP04114 RNA5SP502-201ENST00000362694 119 ntBASIC1.54□□□□□ -2.16
APOBP04114 RNU6-805P-201ENST00000365643 106 ntBASIC1.54□□□□□ -2.16
APOBP04114 TRIM60P18-201ENST00000441518 828 ntBASIC1.54□□□□□ -2.16
APOBP04114 AC105918.1-201ENST00000474399 838 ntBASIC1.54□□□□□ -2.16
APOBP04114 RPL23AP49-201ENST00000492925 468 ntBASIC1.54□□□□□ -2.16
APOBP04114 FAM92A1P2-202ENST00000504766 877 ntBASIC1.54□□□□□ -2.16
APOBP04114 AK6P1-201ENST00000540219 478 ntBASIC1.54□□□□□ -2.16
APOBP04114 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.54□□□□□ -2.16
APOBP04114 AC010378.1-201ENST00000619270 362 ntBASIC1.54□□□□□ -2.16
APOBP04114 AL162233.1-201ENST00000620014 944 ntBASIC1.54□□□□□ -2.16
APOBP04114 AC010338.1-201ENST00000621823 717 ntBASIC1.54□□□□□ -2.16
APOBP04114 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC1.54□□□□□ -2.16
APOBP04114 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
APOBP04114 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC1.54□□□□□ -2.16
APOBP04114 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 AL356320.1-201ENST00000429616 163 ntBASIC1.54□□□□□ -2.16
APOBP04114 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC1.54□□□□□ -2.16
APOBP04114 AC146507.2-201ENST00000460608 476 ntBASIC1.54□□□□□ -2.16
APOBP04114 AP001086.1-201ENST00000494882 321 ntBASIC1.54□□□□□ -2.16
APOBP04114 AP000857.1-201ENST00000532151 543 ntBASIC1.54□□□□□ -2.16
APOBP04114 AC018630.1-201ENST00000541376 925 ntBASIC1.54□□□□□ -2.16
APOBP04114 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC1.54□□□□□ -2.16
APOBP04114 AP003117.2-201ENST00000606010 545 ntBASIC1.54□□□□□ -2.16
APOBP04114 AL356266.1-201ENST00000623311 483 ntBASIC1.54□□□□□ -2.16
APOBP04114 AL353743.4-201ENST00000422653 1547 ntBASIC1.54□□□□□ -2.16
APOBP04114 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC1.54□□□□□ -2.16
APOBP04114 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 AC069218.2-201ENST00000411665 344 ntBASIC1.54□□□□□ -2.16
APOBP04114 PRELID3BP7-201ENST00000503606 469 ntBASIC1.54□□□□□ -2.16
APOBP04114 AC021733.2-201ENST00000518830 497 ntBASIC1.54□□□□□ -2.16
APOBP04114 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
APOBP04114 AP000919.1-202ENST00000581139 1264 ntBASIC1.54□□□□□ -2.16
APOBP04114 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC1.54□□□□□ -2.16
APOBP04114 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
APOBP04114 AC095050.2-201ENST00000510748 1458 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC007342.7-201ENST00000624610 2337 ntBASIC1.53□□□□□ -2.16
APOBP04114 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC1.53□□□□□ -2.16
APOBP04114 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC1.53□□□□□ -2.16
APOBP04114 MDM4-202ENST00000367180 547 ntTSL 3 BASIC1.53□□□□□ -2.16
APOBP04114 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
APOBP04114 AL138878.1-201ENST00000405131 347 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC1.53□□□□□ -2.16
APOBP04114 AL354710.1-201ENST00000453641 246 ntBASIC1.53□□□□□ -2.16
APOBP04114 RN7SL633P-201ENST00000488974 297 ntBASIC1.53□□□□□ -2.16
APOBP04114 DYNLL1P6-201ENST00000503440 264 ntBASIC1.53□□□□□ -2.16
APOBP04114 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC1.53□□□□□ -2.16
APOBP04114 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC1.53□□□□□ -2.16
APOBP04114 AL355836.1-201ENST00000555951 870 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC068313.1-201ENST00000604028 1008 ntBASIC1.53□□□□□ -2.16
APOBP04114 DLEU2_6.1-201ENST00000610536 112 ntBASIC1.53□□□□□ -2.16
APOBP04114 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC1.53□□□□□ -2.16
APOBP04114 USP44-208ENST00000552440 1818 ntTSL 5 BASIC1.53□□□□□ -2.16
APOBP04114 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
APOBP04114 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
APOBP04114 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
APOBP04114 RNU2-2P-201ENST00000410396 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC026436.1-201ENST00000510537 270 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC112673.1-201ENST00000513168 575 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC011611.5-201ENST00000552477 578 ntBASIC1.53□□□□□ -2.16
APOBP04114 OR4H12P-201ENST00000556269 907 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC103968.1-201ENST00000557841 573 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.53□□□□□ -2.16
APOBP04114 MIR4635-201ENST00000583759 79 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.15-201ENST00000611544 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.16-201ENST00000613119 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.12-201ENST00000613778 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.20-201ENST00000613956 192 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.9-201ENST00000615427 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.11-201ENST00000616345 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.2-201ENST00000616535 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.3-201ENST00000617785 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.19-201ENST00000618602 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 RNU2-1-201ENST00000618664 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.6-201ENST00000619225 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.5-201ENST00000619465 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 U2.10-201ENST00000620268 191 ntBASIC1.53□□□□□ -2.16
APOBP04114 AC084035.1-201ENST00000634543 607 ntBASIC1.53□□□□□ -2.16
APOBP04114 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
APOBP04114 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.53□□□□□ -2.16
APOBP04114 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC1.53□□□□□ -2.16
APOBP04114 RPL9P7-201ENST00000330965 580 ntBASIC1.53□□□□□ -2.16
APOBP04114 GSTA9P-201ENST00000406231 611 ntBASIC1.53□□□□□ -2.16
APOBP04114 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.53□□□□□ -2.16
APOBP04114 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms