Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MTND2P41-201ENST00000637599 773 ntBASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.8□□□□□ -1.8
PCDHGA1Q9Y5H4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 RNU6-328P-201ENST00000390887 106 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AL024474.1-201ENST00000404655 591 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 MTCO2P8-201ENST00000412213 658 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC068533.1-201ENST00000418542 415 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AL035423.1-201ENST00000420331 213 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 MTCO2P23-201ENST00000425216 680 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 RAC1P8-201ENST00000427086 527 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 MTCO1P3-201ENST00000429327 192 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 MRPS18BP2-201ENST00000434310 759 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 HSPD1P21-201ENST00000436541 245 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 HLA-N-201ENST00000437516 135 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 RPS20P24-201ENST00000457473 361 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 PNPLA4P1-201ENST00000458328 305 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 RPS4XP13-201ENST00000483219 789 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC106707.2-201ENST00000484182 374 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 MTCO3P35-201ENST00000485582 781 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 NIPA2P2-201ENST00000496376 1083 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 RPL7P47-201ENST00000497299 556 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 WBP1LP4-201ENST00000505043 344 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC026427.2-201ENST00000506228 536 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 RNA5SP164-201ENST00000516533 110 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC027309.2-201ENST00000520566 192 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 OR5M7P-201ENST00000526140 972 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR3200-201ENST00000580767 85 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR5187-201ENST00000583479 76 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR5195-201ENST00000583555 115 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC244505.7-201ENST00000599675 272 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AL160237.3-201ENST00000604114 1013 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AC092650.2-201ENST00000619984 902 ntBASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.79□□□□□ -1.8
PCDHGA1Q9Y5H4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 RNA5SP399-201ENST00000364003 117 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 SUGT1P1-201ENST00000379514 476 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 SNORA51.6-201ENST00000384151 125 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AL583834.1-201ENST00000406943 343 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 RNU6-584P-201ENST00000410350 95 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 RNU4-78P-201ENST00000410940 126 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 OR4K6P-201ENST00000416478 897 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 BOLA3P4-201ENST00000418151 400 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 MTCO3P1-205ENST00000422088 832 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 GTF2IP7-202ENST00000436677 309 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC112492.1-201ENST00000449607 712 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC079776.3-201ENST00000450665 370 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AL358832.1-201ENST00000497800 389 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC074250.1-201ENST00000511117 192 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 MTCO2P32-201ENST00000514865 403 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 RN7SKP18-201ENST00000516005 275 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms