Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 SUMO2P2-201ENST00000456482 255 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 USP9YP25-201ENST00000457708 443 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC010285.1-201ENST00000470580 392 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC090453.1-201ENST00000495560 436 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC010460.1-201ENST00000507087 466 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 XKRY-201ENST00000510392 1100 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 RNU6-1073P-201ENST00000517182 106 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 AP001372.4-201ENST00000524889 472 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC079171.1-201ENST00000568788 914 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC091057.2-201ENST00000602594 792 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 XIAPP1-201ENST00000603162 600 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AL590282.1-201ENST00000610379 1136 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC025588.4-201ENST00000615802 908 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS28Q9UK41 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS28Q9UK41 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS28Q9UK41 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS28Q9UK41 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS28Q9UK41 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS28Q9UK41 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS28Q9UK41 MARK2P15-201ENST00000432204 2186 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS28Q9UK41 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS28Q9UK41 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 BDP1P-201ENST00000582658 1990 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS28Q9UK41 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS28Q9UK41 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS28Q9UK41 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 Y_RNA.126-201ENST00000363382 111 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 SNORA37-201ENST00000384504 129 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 HMGB1P17-201ENST00000403495 628 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AL139421.1-201ENST00000423010 169 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC019178.2-201ENST00000423595 505 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 OR8F1P-201ENST00000425243 930 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 RPL7P2-201ENST00000427639 268 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 Z80107.1-201ENST00000436830 412 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 COX7BP2-201ENST00000437976 242 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 RPS11P1-201ENST00000451072 473 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 BTF3P5-201ENST00000457252 467 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 snoU13.24-201ENST00000458998 104 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS28Q9UK41 VN1R105P-201ENST00000486595 910 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC092045.1-201ENST00000495716 1231 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC110760.3-202ENST00000515177 371 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 RFPL1S-203ENST00000539579 330 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC007599.1-201ENST00000568688 1174 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC053481.4-201ENST00000583164 216 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC104662.1-201ENST00000604448 511 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 AP003392.5-201ENST00000607857 415 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC006386.1-201ENST00000619436 415 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AC004009.2-201ENST00000623016 728 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 OR5BR1P-201ENST00000524992 1330 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 LINC00561-201ENST00000565815 2738 ntBASIC4.11□□□□□ -1.75
VPS28Q9UK41 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS28Q9UK41 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS28Q9UK41 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS28Q9UK41 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 MIR513B-201ENST00000385136 84 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 MIR1251-201ENST00000408552 70 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 HMGB1P49-201ENST00000418882 569 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms