Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 RN7SL172P-201ENST00000460535 303 ntBASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AC108161.1-201ENST00000461060 402 ntBASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 OR4H12P-201ENST00000556269 907 ntBASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AC063943.3-201ENST00000615562 356 ntBASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
TRAIPQ9BWF2 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 NACAP2-201ENST00000318548 624 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RNA5SP335-201ENST00000363817 110 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RNU6-960P-201ENST00000364056 120 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 SNORA58B-201ENST00000364259 136 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RNU1-136P-201ENST00000384181 164 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 MIR223-201ENST00000385204 110 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC110754.1-201ENST00000399740 601 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RNU6ATAC18P-201ENST00000408413 101 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RNA5SP118-201ENST00000410385 109 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 PPP1R11P2-201ENST00000423543 382 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC138761.5-201ENST00000433967 325 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 CYCSP43-201ENST00000438233 310 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC010631.1-201ENST00000474150 156 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RN7SL447P-201ENST00000494711 245 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC069439.1-201ENST00000494739 167 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RPL23AP55-201ENST00000498163 452 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 GAPDHP56-201ENST00000506031 988 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RNA5SP401-201ENST00000515920 127 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 SNORD27.1-201ENST00000516319 72 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 CARD16-203ENST00000525374 503 ntTSL 3 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 PHBP17-201ENST00000528576 541 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 OR5BN1P-201ENST00000532955 829 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 HIF1AP1-201ENST00000553642 175 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 FAM60BP-201ENST00000578364 658 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC012443.1-201ENST00000605605 231 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 AC092747.4-201ENST00000620519 1861 ntBASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
TRAIPQ9BWF2 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 TAB3P1-202ENST00000452645 1634 ntBASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 AC109780.1-201ENST00000451768 1344 ntBASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 AC005294.1-201ENST00000355509 281 ntBASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 Y_RNA.22-201ENST00000362492 102 ntBASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 RNU1-19P-201ENST00000363306 165 ntBASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 RNY3P3-201ENST00000363816 102 ntBASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 SNORA62.1-201ENST00000364287 154 ntBASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 Y_RNA.255-201ENST00000364581 97 ntBASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRAIPQ9BWF2 Y_RNA.390-201ENST00000383932 102 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms