Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE4Q8N205 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE4Q8N205 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.09□□□□□ -1.59
SYNE4Q8N205 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.09□□□□□ -1.59
SYNE4Q8N205 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE4Q8N205 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
SYNE4Q8N205 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE4Q8N205 MAPK10-303ENST00000641324 3959 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE4Q8N205 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC093591.2-201ENST00000565254 3843 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE4Q8N205 RNU6-797P-201ENST00000363101 109 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 RNU6-374P-201ENST00000364146 108 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 MIR30B-201ENST00000384850 88 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 MIR1179-201ENST00000408703 91 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 AL450992.3-201ENST00000413192 568 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 RPS7P13-201ENST00000413955 498 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 MRPS36P1-201ENST00000421291 307 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 SLC44A3-AS1-205ENST00000424505 612 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 MTND3P23-201ENST00000431980 347 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC091862.1-201ENST00000438016 1100 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 DNAJC19P4-201ENST00000440115 345 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 WASF1P1-201ENST00000447560 1131 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC092001.1-201ENST00000453012 261 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AL121579.1-201ENST00000555129 305 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC122134.1-201ENST00000565664 1104 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AL592436.1-201ENST00000605135 558 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC098614.4-201ENST00000607601 462 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 AC025048.6-202ENST00000627667 438 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE4Q8N205 ERCC6-202ENST00000374127 1782 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE4Q8N205 PABPC1P9-201ENST00000426076 1612 ntBASIC5.08□□□□□ -1.6
SYNE4Q8N205 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.08□□□□□ -1.6
SYNE4Q8N205 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE4Q8N205 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC067945.1-201ENST00000342609 618 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 Y_RNA.70-201ENST00000362886 110 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 RNU6-249P-201ENST00000363016 102 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 RNU6-259P-201ENST00000383999 107 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 RNU6-225P-201ENST00000384613 103 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 U8.11-201ENST00000384699 133 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 U8.12-201ENST00000384701 133 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 UBTFL3-201ENST00000418934 1024 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AL009174.1-201ENST00000426577 416 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 TPT1P14-201ENST00000448018 505 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 U8.18-201ENST00000459285 133 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 RPL7P15-201ENST00000461190 712 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 MTND1P16-201ENST00000465177 898 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 RPL30P9-201ENST00000465586 330 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AL121769.1-201ENST00000469473 401 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 UBTFL6-201ENST00000477929 1024 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 HMGB1P36-201ENST00000487709 576 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AL139099.1-201ENST00000497398 403 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC090071.1-201ENST00000507713 644 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC093281.2-201ENST00000510153 597 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC114781.4-201ENST00000513707 639 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 FTH1P11-201ENST00000517577 551 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC109635.3-201ENST00000529536 185 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 OR4K7P-201ENST00000580232 945 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 VN1R92P-201ENST00000598511 928 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC009220.3-201ENST00000604318 586 ntBASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE4Q8N205 AC019176.2-201ENST00000611579 315 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms