Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 RNU6-1003P-201ENST00000517099 105 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 OR5G4P-201ENST00000525251 760 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AP001781.1-201ENST00000530977 207 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC009643.1-201ENST00000532030 391 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 NTS-203ENST00000551529 801 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 MIR4277-201ENST00000578298 84 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC112191.3-201ENST00000604371 277 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC131902.3-201ENST00000611767 581 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC104010.1-201ENST00000616889 150 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC009318.4-201ENST00000620496 486 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC140113.4-201ENST00000622087 222 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC004009.2-201ENST00000623016 728 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC000123.2-201ENST00000623124 461 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC068137.3-201ENST00000639191 341 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC073869.6-201ENST00000640656 341 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AL596275.2-204ENST00000641628 552 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AL596275.2-206ENST00000641957 626 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC139713.2-214ENST00000642059 1811 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC093535.2-201ENST00000624769 2326 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC092435.4-201ENST00000623012 4159 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 EOGT-210ENST00000615922 1931 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 RNA5SP151-201ENST00000365632 117 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC019155.1-201ENST00000382242 574 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 Y_RNA.516-201ENST00000384541 124 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 RNU6-878P-201ENST00000384578 110 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 RNU6-297P-201ENST00000384636 107 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 MIR129-1-201ENST00000384972 72 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 U3.22-201ENST00000391120 215 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 Y_RNA.608-201ENST00000410647 95 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 CYCSP10-201ENST00000417973 294 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 RPS15AP40-201ENST00000419621 391 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 UQCRBP1-201ENST00000421129 336 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AL445669.1-201ENST00000426743 755 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC244505.5-201ENST00000443639 207 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 RPL7P36-201ENST00000444633 681 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC002381.1-201ENST00000447049 280 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AL590365.1-201ENST00000450788 243 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AF186190.1-201ENST00000517470 480 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 HMGB1P19-201ENST00000517578 577 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 ATP5J2P6-201ENST00000565203 266 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC053481.3-201ENST00000577881 843 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 MIR4284-201ENST00000578924 81 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC069061.3-201ENST00000582254 823 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 MIR4697-201ENST00000582977 78 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 TPMTP1-201ENST00000592307 737 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC022916.3-201ENST00000592961 742 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 BBIP1P1-201ENST00000602999 279 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC007566.2-201ENST00000603642 413 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AL513477.2-201ENST00000607858 568 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC013476.2-201ENST00000614456 459 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AP001506.1-201ENST00000615444 211 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AL049536.1-201ENST00000625043 744 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 AC099654.12-201ENST00000639868 649 ntBASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD3Q3KNS1 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms