Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.31□□□□□ -1.88
SHHQ15465 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.31□□□□□ -1.88
SHHQ15465 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.31□□□□□ -1.88
SHHQ15465 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.31□□□□□ -1.88
SHHQ15465 AC245128.3-201ENST00000594721 748 ntBASIC3.31□□□□□ -1.88
SHHQ15465 KATNBL1P1-201ENST00000605192 748 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC007619.2-201ENST00000605743 379 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC100814.1-201ENST00000606963 623 ntBASIC3.31□□□□□ -1.88
SHHQ15465 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC004943.3-201ENST00000624116 600 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC106730.3-201ENST00000624568 641 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC244205.2-202ENST00000635781 342 ntBASIC3.31□□□□□ -1.88
SHHQ15465 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHHQ15465 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHHQ15465 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
SHHQ15465 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SHHQ15465 MIR196B-201ENST00000384852 84 ntBASIC3.3□□□□□ -1.88
SHHQ15465 RNU6-1176P-201ENST00000390955 107 ntBASIC3.3□□□□□ -1.88
SHHQ15465 HMGN2P8-201ENST00000391458 268 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AC105402.1-201ENST00000413336 545 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.3□□□□□ -1.88
SHHQ15465 RPS6P14-201ENST00000425165 719 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AL031736.2-201ENST00000426573 787 ntBASIC3.3□□□□□ -1.88
SHHQ15465 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.3□□□□□ -1.88
SHHQ15465 IFNNP1-201ENST00000429219 553 ntBASIC3.3□□□□□ -1.88
SHHQ15465 MRPS33P4-201ENST00000434892 317 ntBASIC3.3□□□□□ -1.88
SHHQ15465 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC3.3□□□□□ -1.88
SHHQ15465 CFTRP1-201ENST00000456646 183 ntBASIC3.3□□□□□ -1.88
SHHQ15465 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.3□□□□□ -1.88
SHHQ15465 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.3□□□□□ -1.88
SHHQ15465 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.3□□□□□ -1.88
SHHQ15465 RPL30P11-201ENST00000495304 339 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.3□□□□□ -1.88
SHHQ15465 COL6A4P2-205ENST00000509855 506 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AC108157.1-201ENST00000510511 539 ntBASIC3.3□□□□□ -1.88
SHHQ15465 OR5H4P-201ENST00000510851 923 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AP001207.2-201ENST00000519490 539 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AL133457.1-201ENST00000564251 987 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.3□□□□□ -1.88
SHHQ15465 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.3□□□□□ -1.88
SHHQ15465 BNIP3P39-201ENST00000601077 554 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.3□□□□□ -1.88
SHHQ15465 AC090525.3-201ENST00000605601 189 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC3.3□□□□□ -1.88
SHHQ15465 AC012467.1-201ENST00000607740 256 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AC024933.1-201ENST00000608472 348 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AL590808.1-201ENST00000618696 141 ntBASIC3.3□□□□□ -1.88
SHHQ15465 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.3□□□□□ -1.88
SHHQ15465 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SHHQ15465 AC009487.2-201ENST00000420969 6821 ntBASIC3.3□□□□□ -1.88
SHHQ15465 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SHHQ15465 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.3□□□□□ -1.88
SHHQ15465 ELF2P3-201ENST00000445099 1506 ntBASIC3.29□□□□□ -1.88
SHHQ15465 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SHHQ15465 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
SHHQ15465 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SHHQ15465 MIR421-201ENST00000365696 85 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AC004022.2-201ENST00000413824 193 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.29□□□□□ -1.88
SHHQ15465 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.29□□□□□ -1.88
SHHQ15465 ARF4P2-201ENST00000430209 526 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AC087499.2-201ENST00000432861 149 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.29□□□□□ -1.88
SHHQ15465 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.29□□□□□ -1.88
SHHQ15465 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.29□□□□□ -1.88
SHHQ15465 RN7SL93P-201ENST00000463035 293 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AC093770.1-201ENST00000511559 571 ntBASIC3.29□□□□□ -1.88
SHHQ15465 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.29□□□□□ -1.88
SHHQ15465 RNU4-29P-201ENST00000515943 174 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC3.29□□□□□ -1.88
SHHQ15465 EEF1A1P37-201ENST00000522748 715 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.29□□□□□ -1.88
SHHQ15465 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.29□□□□□ -1.88
SHHQ15465 AP002812.4-201ENST00000532139 286 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AL731537.2-201ENST00000561565 951 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AC122134.1-202ENST00000569111 1201 ntBASIC3.29□□□□□ -1.88
SHHQ15465 MTND4LP24-201ENST00000572277 291 ntBASIC3.29□□□□□ -1.88
SHHQ15465 AP000240.1-201ENST00000609910 452 ntBASIC3.29□□□□□ -1.88
SHHQ15465 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SHHQ15465 AL391262.2-201ENST00000622466 494 ntBASIC3.29□□□□□ -1.88
SHHQ15465 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
SHHQ15465 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SHHQ15465 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.29□□□□□ -1.88
SHHQ15465 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SHHQ15465 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.29□□□□□ -1.88
SHHQ15465 AC046144.1-201ENST00000478559 1853 ntBASIC3.28□□□□□ -1.88
SHHQ15465 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SHHQ15465 U3.12-201ENST00000364498 214 ntBASIC3.28□□□□□ -1.88
SHHQ15465 U3.15-201ENST00000365398 212 ntBASIC3.28□□□□□ -1.88
SHHQ15465 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.28□□□□□ -1.88
SHHQ15465 RPL7P25-201ENST00000404151 721 ntBASIC3.28□□□□□ -1.88
SHHQ15465 RPS12P23-201ENST00000419579 400 ntBASIC3.28□□□□□ -1.88
SHHQ15465 MTND2P9-201ENST00000422293 931 ntBASIC3.28□□□□□ -1.88
SHHQ15465 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.28□□□□□ -1.88
SHHQ15465 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.28□□□□□ -1.88
SHHQ15465 AL691517.1-201ENST00000440833 1235 ntBASIC3.28□□□□□ -1.88
SHHQ15465 RPL34P26-201ENST00000445636 354 ntBASIC3.28□□□□□ -1.88
SHHQ15465 RPS4XP2-201ENST00000458402 793 ntBASIC3.28□□□□□ -1.88
SHHQ15465 SNORD109B-201ENST00000458961 67 ntBASIC3.28□□□□□ -1.88
SHHQ15465 SNORD109A-201ENST00000459128 67 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms