Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RNU6-661P-201ENST00000362409 107 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
HSPG2P98160 MIR518E-201ENST00000385252 88 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 RNU6-55P-201ENST00000411092 107 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 RNU6-954P-201ENST00000411355 107 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 AL356320.1-201ENST00000429616 163 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 MTCO1P42-201ENST00000457379 726 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 NFU1-207ENST00000462320 558 ntTSL 4 BASIC1.59□□□□□ -2.15
HSPG2P98160 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC1.59□□□□□ -2.15
HSPG2P98160 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
HSPG2P98160 OR4U1P-201ENST00000554958 912 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.59□□□□□ -2.15
HSPG2P98160 AC107081.3-201ENST00000612715 2034 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC1.59□□□□□ -2.16
HSPG2P98160 AL121877.1-201ENST00000453704 622 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 PANCR-202ENST00000513690 448 ntTSL 2 BASIC1.59□□□□□ -2.16
HSPG2P98160 WISP1-OT1-201ENST00000602893 642 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 MIR1291-201ENST00000627649 87 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.16
HSPG2P98160 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC1.59□□□□□ -2.16
HSPG2P98160 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
HSPG2P98160 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC1.59□□□□□ -2.16
HSPG2P98160 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
HSPG2P98160 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
HSPG2P98160 AL359511.1-201ENST00000402970 211 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL591416.1-201ENST00000404015 867 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 YPEL5P1-201ENST00000419731 367 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 BX679664.1-201ENST00000434429 253 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL354710.1-201ENST00000453641 246 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 RNU6-1231P-201ENST00000517185 103 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.6-201ENST00000603753 252 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.11-201ENST00000604059 253 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.10-201ENST00000604330 253 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AC008162.1-201ENST00000604718 254 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.1-201ENST00000604752 252 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.2-201ENST00000604983 252 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.5-201ENST00000605253 252 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.4-201ENST00000605279 254 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.12-201ENST00000605291 253 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.8-201ENST00000605353 252 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.9-201ENST00000605428 253 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 AL670379.7-201ENST00000605823 252 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 U4.3-201ENST00000621047 82 ntBASIC1.59□□□□□ -2.16
HSPG2P98160 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC1.59□□□□□ -2.16
HSPG2P98160 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
HSPG2P98160 AC117529.2-201ENST00000512159 2068 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 AC245054.2-201ENST00000415639 319 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC1.58□□□□□ -2.16
HSPG2P98160 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC1.58□□□□□ -2.16
HSPG2P98160 AC106872.3-201ENST00000495104 446 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC1.58□□□□□ -2.16
HSPG2P98160 AC008277.2-201ENST00000605196 797 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 AC018690.1-201ENST00000608144 626 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 AC006111.3-201ENST00000622137 383 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC1.58□□□□□ -2.16
HSPG2P98160 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
HSPG2P98160 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
HSPG2P98160 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC1.58□□□□□ -2.16
HSPG2P98160 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 MIR148B-201ENST00000362252 99 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 AL353729.1-201ENST00000425044 720 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC1.58□□□□□ -2.16
HSPG2P98160 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC1.58□□□□□ -2.16
HSPG2P98160 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC1.58□□□□□ -2.16
HSPG2P98160 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 snoU13.18-201ENST00000459483 104 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 HMGB1P25-201ENST00000468402 607 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 AC011037.1-201ENST00000483964 558 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 RNA5SP217-201ENST00000515959 91 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 AC021733.2-201ENST00000518830 497 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.58□□□□□ -2.16
HSPG2P98160 AC078899.5-201ENST00000612475 178 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC1.58□□□□□ -2.16
HSPG2P98160 AC008264.2-201ENST00000610193 3731 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 GSTA9P-201ENST00000406231 611 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 RN7SKP58-201ENST00000411010 305 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 RPLP0P7-201ENST00000416050 667 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 HMGB3P11-201ENST00000440127 604 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 AP001086.1-201ENST00000494882 321 ntBASIC1.58□□□□□ -2.16
HSPG2P98160 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.58□□□□□ -2.16
HSPG2P98160 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HSPG2P98160 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC1.58□□□□□ -2.16
HSPG2P98160 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC1.57□□□□□ -2.16
HSPG2P98160 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
HSPG2P98160 VDAC1P3-201ENST00000434069 851 ntBASIC1.57□□□□□ -2.16
HSPG2P98160 BTG3P1-201ENST00000435859 716 ntBASIC1.57□□□□□ -2.16
HSPG2P98160 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC1.57□□□□□ -2.16
HSPG2P98160 AL109741.3-201ENST00000561748 592 ntBASIC1.57□□□□□ -2.16
HSPG2P98160 AC073869.7-201ENST00000640874 297 ntBASIC1.57□□□□□ -2.16
HSPG2P98160 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 144.3 ms