Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 OR5BN1P-201ENST00000532955 829 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC027369.5-201ENST00000533838 755 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC068831.4-201ENST00000556118 109 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC007225.2-201ENST00000562529 256 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC005668.1-201ENST00000571142 476 ntBASIC5.58□□□□□ -1.52
LIG3P49916 MIR3176-201ENST00000582210 90 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.58□□□□□ -1.52
LIG3P49916 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.58□□□□□ -1.52
LIG3P49916 AC012616.1-201ENST00000600294 197 ntBASIC5.58□□□□□ -1.52
LIG3P49916 RMST_7.1-201ENST00000621935 268 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC090617.10-201ENST00000624308 134 ntBASIC5.58□□□□□ -1.52
LIG3P49916 TPTEP1-208ENST00000636884 213 ntBASIC5.58□□□□□ -1.52
LIG3P49916 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
LIG3P49916 OR4F13P-202ENST00000560066 2054 ntBASIC5.58□□□□□ -1.52
LIG3P49916 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
LIG3P49916 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.58□□□□□ -1.52
LIG3P49916 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.58□□□□□ -1.52
LIG3P49916 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIG3P49916 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.58□□□□□ -1.52
LIG3P49916 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
LIG3P49916 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIG3P49916 SAGE4P-201ENST00000442271 3381 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIG3P49916 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 AC007529.1-201ENST00000418574 2178 ntBASIC5.57□□□□□ -1.52
LIG3P49916 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.57□□□□□ -1.52
LIG3P49916 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.57□□□□□ -1.52
LIG3P49916 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.57□□□□□ -1.52
LIG3P49916 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
LIG3P49916 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
LIG3P49916 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.57□□□□□ -1.52
LIG3P49916 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
LIG3P49916 AC005294.1-201ENST00000355509 281 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.57□□□□□ -1.52
LIG3P49916 RNU6-249P-201ENST00000363016 102 ntBASIC5.57□□□□□ -1.52
LIG3P49916 RNU5E-8P-201ENST00000363502 116 ntBASIC5.57□□□□□ -1.52
LIG3P49916 RN7SKP6-201ENST00000364795 319 ntBASIC5.57□□□□□ -1.52
LIG3P49916 Y_RNA.367-201ENST00000365544 101 ntBASIC5.57□□□□□ -1.52
LIG3P49916 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
LIG3P49916 RNU6-1227P-201ENST00000383981 107 ntBASIC5.57□□□□□ -1.52
LIG3P49916 MIR551A-201ENST00000385042 96 ntBASIC5.57□□□□□ -1.52
LIG3P49916 SNORD37.1-201ENST00000390968 65 ntBASIC5.57□□□□□ -1.52
LIG3P49916 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.57□□□□□ -1.52
LIG3P49916 AC005042.1-201ENST00000393397 800 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AL359643.1-201ENST00000404109 423 ntBASIC5.57□□□□□ -1.52
LIG3P49916 RPL31P2-201ENST00000413849 377 ntBASIC5.57□□□□□ -1.52
LIG3P49916 RNF10P1-201ENST00000418589 369 ntBASIC5.57□□□□□ -1.52
LIG3P49916 NCOR1P3-201ENST00000420479 303 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AL353678.1-201ENST00000422735 741 ntBASIC5.57□□□□□ -1.52
LIG3P49916 RPL12P17-201ENST00000432393 498 ntBASIC5.57□□□□□ -1.52
LIG3P49916 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC5.57□□□□□ -1.52
LIG3P49916 OR6D1P-201ENST00000436165 939 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AL138799.3-201ENST00000438968 350 ntBASIC5.57□□□□□ -1.52
LIG3P49916 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.57□□□□□ -1.52
LIG3P49916 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
LIG3P49916 AC022034.3-201ENST00000471393 478 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AC100832.1-201ENST00000471945 383 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AC010683.1-201ENST00000473673 378 ntBASIC5.57□□□□□ -1.52
LIG3P49916 SIAH1P1-201ENST00000479411 923 ntBASIC5.57□□□□□ -1.52
LIG3P49916 RN7SL547P-201ENST00000490793 290 ntBASIC5.57□□□□□ -1.52
LIG3P49916 SNORA19.2-201ENST00000516013 114 ntBASIC5.57□□□□□ -1.52
LIG3P49916 BTF3P12-201ENST00000519620 469 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.57□□□□□ -1.52
LIG3P49916 AC122688.1-201ENST00000541494 223 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AL355375.2-201ENST00000574825 175 ntBASIC5.57□□□□□ -1.52
LIG3P49916 MIR4489-201ENST00000578869 62 ntBASIC5.57□□□□□ -1.52
LIG3P49916 COX6CP3-201ENST00000580869 223 ntBASIC5.57□□□□□ -1.52
LIG3P49916 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.57□□□□□ -1.52
LIG3P49916 AC245517.5-201ENST00000611529 162 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AL118522.2-201ENST00000616045 615 ntBASIC5.57□□□□□ -1.52
LIG3P49916 MIR8080-201ENST00000622224 89 ntBASIC5.57□□□□□ -1.52
LIG3P49916 AC015871.5-202ENST00000623252 701 ntBASIC5.57□□□□□ -1.52
LIG3P49916 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC5.57□□□□□ -1.52
LIG3P49916 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 AL353796.1-201ENST00000561542 3241 ntBASIC5.57□□□□□ -1.52
LIG3P49916 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIG3P49916 THAP12P4-201ENST00000528321 2266 ntBASIC5.57□□□□□ -1.52
LIG3P49916 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.56□□□□□ -1.52
LIG3P49916 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
LIG3P49916 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG3P49916 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 RNA5SP234-201ENST00000363916 119 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG3P49916 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LIG3P49916 SNORA32.2-201ENST00000384049 122 ntBASIC5.56□□□□□ -1.52
LIG3P49916 MIR19A-201ENST00000384878 82 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AL354751.2-201ENST00000415471 210 ntBASIC5.56□□□□□ -1.52
LIG3P49916 Z93019.1-201ENST00000416450 973 ntBASIC5.56□□□□□ -1.52
LIG3P49916 AC127526.1-201ENST00000417526 366 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms