Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MAPK10-322ENST00000641485 4530 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 RNU6-178P-201ENST00000384631 104 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 MIR181B1-201ENST00000385240 110 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 RNU6-482P-201ENST00000391068 107 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC3.35□□□□□ -1.87
COL18A1P39060 AL135786.1-201ENST00000415892 214 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.35□□□□□ -1.87
COL18A1P39060 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.35□□□□□ -1.87
COL18A1P39060 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.35□□□□□ -1.87
COL18A1P39060 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC3.35□□□□□ -1.87
COL18A1P39060 RPL7P12-201ENST00000446719 750 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AC234781.5-201ENST00000508429 271 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AL133271.1-201ENST00000538229 291 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 TRAV37-201ENST00000553906 342 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.35□□□□□ -1.87
COL18A1P39060 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.35□□□□□ -1.87
COL18A1P39060 AC009101.1-201ENST00000568135 242 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.35□□□□□ -1.87
COL18A1P39060 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.35□□□□□ -1.87
COL18A1P39060 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.35□□□□□ -1.87
COL18A1P39060 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC3.35□□□□□ -1.87
COL18A1P39060 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL18A1P39060 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL18A1P39060 RNA5SP247-201ENST00000411181 105 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 AC009302.1-201ENST00000417147 390 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 AL590399.6-201ENST00000446396 307 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 AC133473.1-201ENST00000455173 299 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.34□□□□□ -1.87
COL18A1P39060 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.34□□□□□ -1.87
COL18A1P39060 RPS4XP6-201ENST00000477670 797 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.34□□□□□ -1.87
COL18A1P39060 RNU6-1231P-201ENST00000517185 103 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 AC019227.1-201ENST00000526902 510 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.34□□□□□ -1.87
COL18A1P39060 AC128657.1-201ENST00000549459 145 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 AC007938.3-201ENST00000604965 623 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 CRYM-AS1-204ENST00000637983 556 ntBASIC3.34□□□□□ -1.87
COL18A1P39060 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
COL18A1P39060 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
COL18A1P39060 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL18A1P39060 RNA5SP105-201ENST00000391123 113 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.33□□□□□ -1.88
COL18A1P39060 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.33□□□□□ -1.88
COL18A1P39060 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.33□□□□□ -1.88
COL18A1P39060 SNORA31.1-201ENST00000515993 133 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 SNORA31.5-201ENST00000516190 133 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL18A1P39060 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.33□□□□□ -1.88
COL18A1P39060 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC3.33□□□□□ -1.88
COL18A1P39060 AC007423.1-201ENST00000605009 627 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.33□□□□□ -1.88
COL18A1P39060 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.33□□□□□ -1.88
COL18A1P39060 AL450326.2-201ENST00000421913 1962 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 GTF2H2B-203ENST00000508065 1432 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
COL18A1P39060 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
COL18A1P39060 SNORA70E-201ENST00000384492 135 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 EI24P2-201ENST00000397776 1076 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.33□□□□□ -1.88
COL18A1P39060 AL592437.1-201ENST00000443781 492 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 AC008280.2-201ENST00000455473 307 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 AP001960.1-201ENST00000506494 658 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 AC034244.2-201ENST00000514668 858 ntBASIC3.33□□□□□ -1.88
COL18A1P39060 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.33□□□□□ -1.88
COL18A1P39060 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.33□□□□□ -1.88
COL18A1P39060 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.33□□□□□ -1.88
COL18A1P39060 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL18A1P39060 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
COL18A1P39060 CYCSP45-201ENST00000402289 315 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 RPL5P19-201ENST00000404228 893 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 AC069218.2-201ENST00000411665 344 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 AMD1P2-201ENST00000412936 992 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.32□□□□□ -1.88
COL18A1P39060 RAC1P3-201ENST00000416129 580 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.32□□□□□ -1.88
COL18A1P39060 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL18A1P39060 RPS12P2-201ENST00000439728 269 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 AC108471.1-201ENST00000513977 287 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.32□□□□□ -1.88
COL18A1P39060 SEC11B-201ENST00000518383 499 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 IGKV2-36-201ENST00000519999 223 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 AC022616.2-201ENST00000523185 300 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 MIR1273D-201ENST00000577266 86 ntBASIC3.32□□□□□ -1.88
COL18A1P39060 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL18A1P39060 Y_RNA.62-201ENST00000362840 99 ntBASIC3.31□□□□□ -1.88
COL18A1P39060 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC3.31□□□□□ -1.88
COL18A1P39060 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC3.31□□□□□ -1.88
COL18A1P39060 AL137014.1-201ENST00000420490 1226 ntBASIC3.31□□□□□ -1.88
COL18A1P39060 MTCO3P17-201ENST00000443775 513 ntBASIC3.31□□□□□ -1.88
COL18A1P39060 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.31□□□□□ -1.88
COL18A1P39060 RPL36AP51-201ENST00000487216 318 ntBASIC3.31□□□□□ -1.88
COL18A1P39060 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.31□□□□□ -1.88
COL18A1P39060 AP000867.2-201ENST00000532468 320 ntBASIC3.31□□□□□ -1.88
COL18A1P39060 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms