Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX1P28360 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX1P28360 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
MSX1P28360 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX1P28360 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX1P28360 MIR5188-201ENST00000583467 113 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX1P28360 AC008162.1-201ENST00000604718 254 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AL670379.4-201ENST00000605279 254 ntBASIC5.73□□□□□ -1.49
MSX1P28360 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 AC073488.6-201ENST00000632293 754 ntBASIC5.73□□□□□ -1.49
MSX1P28360 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 AC062029.1-202ENST00000606164 3651 ntBASIC5.73□□□□□ -1.49
MSX1P28360 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSX1P28360 AC022034.1-201ENST00000512867 2156 ntBASIC5.73□□□□□ -1.49
MSX1P28360 BIN2P1-201ENST00000504996 1530 ntBASIC5.73□□□□□ -1.49
MSX1P28360 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSX1P28360 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC5.73□□□□□ -1.49
MSX1P28360 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSX1P28360 AC093775.1-201ENST00000624154 1868 ntBASIC5.73□□□□□ -1.49
MSX1P28360 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX1P28360 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 MFSD8-219ENST00000641228 2559 ntBASIC5.72□□□□□ -1.49
MSX1P28360 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.72□□□□□ -1.49
MSX1P28360 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.72□□□□□ -1.49
MSX1P28360 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
MSX1P28360 COX6B1P3-201ENST00000312310 260 ntBASIC5.72□□□□□ -1.49
MSX1P28360 RNU6-770P-201ENST00000363929 105 ntBASIC5.72□□□□□ -1.49
MSX1P28360 RNU6-214P-201ENST00000384130 107 ntBASIC5.72□□□□□ -1.49
MSX1P28360 RNU6-842P-201ENST00000384269 107 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AL157702.1-201ENST00000398764 426 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX1P28360 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX1P28360 REREP1Y-201ENST00000422655 198 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC094019.1-201ENST00000434678 472 ntBASIC5.72□□□□□ -1.49
MSX1P28360 RHOT1P3-201ENST00000436571 331 ntBASIC5.72□□□□□ -1.49
MSX1P28360 PPIAP10-201ENST00000438675 458 ntBASIC5.72□□□□□ -1.49
MSX1P28360 REREP2Y-201ENST00000439103 200 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AL359672.1-201ENST00000442302 409 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.72□□□□□ -1.49
MSX1P28360 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.72□□□□□ -1.49
MSX1P28360 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.72□□□□□ -1.49
MSX1P28360 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.72□□□□□ -1.49
MSX1P28360 CYCSP34-201ENST00000458172 304 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC105758.1-201ENST00000506038 399 ntBASIC5.72□□□□□ -1.49
MSX1P28360 RNU6-347P-201ENST00000516658 105 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC007991.1-201ENST00000522680 631 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX1P28360 RN7SL802P-201ENST00000577858 299 ntBASIC5.72□□□□□ -1.49
MSX1P28360 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.72□□□□□ -1.49
MSX1P28360 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC5.72□□□□□ -1.49
MSX1P28360 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.72□□□□□ -1.49
MSX1P28360 AC010201.1-201ENST00000605051 540 ntBASIC5.72□□□□□ -1.49
MSX1P28360 RPSAP75-201ENST00000605848 301 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX1P28360 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX1P28360 FTX_2.1-201ENST00000618816 94 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC091903.1-201ENST00000624322 454 ntBASIC5.72□□□□□ -1.49
MSX1P28360 AC116667.2-201ENST00000641075 823 ntBASIC5.72□□□□□ -1.49
MSX1P28360 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.72□□□□□ -1.49
MSX1P28360 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX1P28360 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
MSX1P28360 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.72□□□□□ -1.49
MSX1P28360 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX1P28360 AC092692.1-201ENST00000623625 2595 ntBASIC5.71□□□□□ -1.49
MSX1P28360 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
MSX1P28360 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
MSX1P28360 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.71□□□□□ -1.49
MSX1P28360 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
MSX1P28360 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX1P28360 AL359976.1-201ENST00000418655 3528 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 RNU6-1243P-201ENST00000364028 107 ntBASIC5.71□□□□□ -1.5
MSX1P28360 Y_RNA.551-201ENST00000384661 102 ntBASIC5.71□□□□□ -1.5
MSX1P28360 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
MSX1P28360 MIR548I2-201ENST00000408348 149 ntBASIC5.71□□□□□ -1.5
MSX1P28360 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 AC069213.2-201ENST00000420238 366 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX1P28360 AC007568.1-201ENST00000422912 471 ntBASIC5.71□□□□□ -1.5
MSX1P28360 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms