Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.17□□□□□ -1.9
APOEP02649 AC091953.5-201ENST00000622919 233 ntBASIC3.17□□□□□ -1.9
APOEP02649 AC084035.1-201ENST00000634543 607 ntBASIC3.17□□□□□ -1.9
APOEP02649 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
APOEP02649 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
APOEP02649 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 SNORA48.5-201ENST00000391143 135 ntBASIC3.16□□□□□ -1.9
APOEP02649 AL590290.1-201ENST00000405336 380 ntBASIC3.16□□□□□ -1.9
APOEP02649 RN7SKP220-201ENST00000410611 288 ntBASIC3.16□□□□□ -1.9
APOEP02649 RN7SKP58-201ENST00000411010 305 ntBASIC3.16□□□□□ -1.9
APOEP02649 BMS1P22-201ENST00000414726 313 ntBASIC3.16□□□□□ -1.9
APOEP02649 AL139281.1-201ENST00000422120 335 ntBASIC3.16□□□□□ -1.9
APOEP02649 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
APOEP02649 AC104332.2-201ENST00000429959 156 ntBASIC3.16□□□□□ -1.9
APOEP02649 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
APOEP02649 RPL21P2-201ENST00000440049 481 ntBASIC3.16□□□□□ -1.9
APOEP02649 AL627224.1-201ENST00000448334 444 ntBASIC3.16□□□□□ -1.9
APOEP02649 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.16□□□□□ -1.9
APOEP02649 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.16□□□□□ -1.9
APOEP02649 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.16□□□□□ -1.9
APOEP02649 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
APOEP02649 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.16□□□□□ -1.9
APOEP02649 AC009812.2-201ENST00000517657 457 ntBASIC3.16□□□□□ -1.9
APOEP02649 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.16□□□□□ -1.9
APOEP02649 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.16□□□□□ -1.9
APOEP02649 OR6C73P-201ENST00000546432 358 ntBASIC3.16□□□□□ -1.9
APOEP02649 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 CENPUP2-201ENST00000555897 1186 ntBASIC3.16□□□□□ -1.9
APOEP02649 AC023158.1-201ENST00000561632 1025 ntBASIC3.16□□□□□ -1.9
APOEP02649 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.16□□□□□ -1.9
APOEP02649 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 AL162574.2-201ENST00000614618 657 ntBASIC3.16□□□□□ -1.9
APOEP02649 AC022079.2-201ENST00000619739 566 ntBASIC3.16□□□□□ -1.9
APOEP02649 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
APOEP02649 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
APOEP02649 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.15□□□□□ -1.9
APOEP02649 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.15□□□□□ -1.9
APOEP02649 AC000403.1-201ENST00000613696 3585 ntBASIC3.15□□□□□ -1.9
APOEP02649 RNU6-670P-201ENST00000364312 104 ntBASIC3.15□□□□□ -1.91
APOEP02649 SNORA54-201ENST00000384281 123 ntBASIC3.15□□□□□ -1.91
APOEP02649 RNU6-452P-201ENST00000384406 107 ntBASIC3.15□□□□□ -1.91
APOEP02649 RNA5SP274-201ENST00000410484 108 ntBASIC3.15□□□□□ -1.91
APOEP02649 RPS15AP40-201ENST00000419621 391 ntBASIC3.15□□□□□ -1.91
APOEP02649 AC022018.1-201ENST00000430685 241 ntBASIC3.15□□□□□ -1.91
APOEP02649 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.15□□□□□ -1.91
APOEP02649 OR2A20P-203ENST00000498397 1268 ntBASIC3.15□□□□□ -1.91
APOEP02649 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.15□□□□□ -1.91
APOEP02649 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.15□□□□□ -1.91
APOEP02649 RN7SKP43-201ENST00000516173 320 ntBASIC3.15□□□□□ -1.91
APOEP02649 MTND2P26-201ENST00000528255 1029 ntBASIC3.15□□□□□ -1.91
APOEP02649 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
APOEP02649 AP002812.4-201ENST00000532139 286 ntBASIC3.15□□□□□ -1.91
APOEP02649 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
APOEP02649 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.15□□□□□ -1.91
APOEP02649 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.15□□□□□ -1.91
APOEP02649 MTCO3P24-201ENST00000572729 782 ntBASIC3.15□□□□□ -1.91
APOEP02649 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC3.15□□□□□ -1.91
APOEP02649 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.15□□□□□ -1.91
APOEP02649 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.15□□□□□ -1.91
APOEP02649 AC009487.2-201ENST00000420969 6821 ntBASIC3.15□□□□□ -1.91
APOEP02649 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.15□□□□□ -1.91
APOEP02649 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
APOEP02649 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.14□□□□□ -1.91
APOEP02649 RPL23AP57-201ENST00000332361 466 ntBASIC3.14□□□□□ -1.91
APOEP02649 RNU1-140P-201ENST00000365040 165 ntBASIC3.14□□□□□ -1.91
APOEP02649 MIR607-201ENST00000385241 96 ntBASIC3.14□□□□□ -1.91
APOEP02649 AL354719.1-201ENST00000406535 843 ntBASIC3.14□□□□□ -1.91
APOEP02649 SNORA11C-201ENST00000408532 129 ntBASIC3.14□□□□□ -1.91
APOEP02649 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.14□□□□□ -1.91
APOEP02649 AC008280.1-201ENST00000418851 412 ntBASIC3.14□□□□□ -1.91
APOEP02649 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC3.14□□□□□ -1.91
APOEP02649 Z99127.2-201ENST00000441426 334 ntBASIC3.14□□□□□ -1.91
APOEP02649 RSL24D1P3-201ENST00000449255 495 ntBASIC3.14□□□□□ -1.91
APOEP02649 RPL36AP33-201ENST00000450395 310 ntBASIC3.14□□□□□ -1.91
APOEP02649 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.14□□□□□ -1.91
APOEP02649 HMGN2P16-201ENST00000456802 261 ntBASIC3.14□□□□□ -1.91
APOEP02649 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.14□□□□□ -1.91
APOEP02649 snoU13.24-201ENST00000458998 104 ntBASIC3.14□□□□□ -1.91
APOEP02649 PRELID3BP6-201ENST00000503839 571 ntBASIC3.14□□□□□ -1.91
APOEP02649 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.14□□□□□ -1.91
APOEP02649 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.14□□□□□ -1.91
APOEP02649 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.14□□□□□ -1.91
APOEP02649 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.14□□□□□ -1.91
APOEP02649 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.14□□□□□ -1.91
APOEP02649 MIR3690-201ENST00000580266 75 ntBASIC3.14□□□□□ -1.91
APOEP02649 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.14□□□□□ -1.91
APOEP02649 AL627309.6-201ENST00000606857 840 ntBASIC3.14□□□□□ -1.91
APOEP02649 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.14□□□□□ -1.91
APOEP02649 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.14□□□□□ -1.91
APOEP02649 MIR6864-201ENST00000617935 70 ntBASIC3.14□□□□□ -1.91
APOEP02649 AC092435.3-201ENST00000565538 3654 ntBASIC3.14□□□□□ -1.91
APOEP02649 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
APOEP02649 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.14□□□□□ -1.91
APOEP02649 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.13□□□□□ -1.91
APOEP02649 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms