Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC093809.1-201ENST00000509155 340 ntBASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AC104057.1-201ENST00000515547 497 ntBASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 LARP7P2-201ENST00000575306 125 ntBASIC4.39□□□□□ -1.71
VPS4AQ9UN37 MIR4512-201ENST00000583257 77 ntBASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AC079089.3-201ENST00000603094 673 ntBASIC4.39□□□□□ -1.71
VPS4AQ9UN37 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 AC009951.1-201ENST00000623674 2614 ntBASIC4.39□□□□□ -1.71
VPS4AQ9UN37 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS4AQ9UN37 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC011266.1-201ENST00000624119 3569 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 Z73965.1-201ENST00000623412 2297 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 ERCC6-202ENST00000374127 1782 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 Y_RNA.97-201ENST00000363094 102 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RNA5SP509-201ENST00000364577 119 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RNA5SP372-201ENST00000390836 115 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 HSPD1P16-201ENST00000402302 394 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 Z98745.1-201ENST00000402553 494 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 ZNF603P-201ENST00000405613 487 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RN7SKP267-201ENST00000410381 285 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC007899.1-201ENST00000412776 775 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RSU1P3-201ENST00000412878 835 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC092647.1-201ENST00000420654 287 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RPL7P30-201ENST00000420888 709 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 UQCRBP1-201ENST00000421129 336 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RPS3AP44-201ENST00000425466 790 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 USP9YP14-201ENST00000430663 563 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 MTCYBP1-201ENST00000454315 1119 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RNU7-136P-201ENST00000458819 69 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC011276.1-201ENST00000469688 323 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RNA5SP497-201ENST00000516081 97 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 RNU6-720P-201ENST00000516363 108 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 HMGB3P26-201ENST00000560051 582 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC141257.3-201ENST00000572906 215 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AC087683.1-201ENST00000591187 441 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AL021997.1-201ENST00000605757 193 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AL359715.5-201ENST00000623431 443 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 U6.101-201ENST00000637707 76 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS4AQ9UN37 AL356473.1-201ENST00000406203 1408 ntBASIC4.38□□□□□ -1.71
VPS4AQ9UN37 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 SAGE2P-201ENST00000420011 2126 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 OR56B2P-202ENST00000641377 2453 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 RNU6-1243P-201ENST00000364028 107 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 RNA5SP515-201ENST00000364570 118 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 OR6C69P-201ENST00000394268 893 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 RN7SKP266-201ENST00000410232 287 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AL389915.1-201ENST00000422463 466 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AL138785.1-201ENST00000425821 331 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 OR5BE1P-201ENST00000425977 939 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 RPL21P91-201ENST00000429231 479 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms