Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC026402.1-201ENST00000513642 170 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 RNY4P37-201ENST00000516225 96 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 HSPA8P13-201ENST00000523715 472 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC109635.4-202ENST00000531666 412 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AL121603.1-201ENST00000553815 142 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 MTND4P33-201ENST00000556706 766 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC009712.1-201ENST00000564938 316 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC020914.4-201ENST00000597690 277 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 BNIP3P11-201ENST00000603878 563 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC010738.1-201ENST00000604970 987 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC055876.5-201ENST00000605667 259 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC011816.2-201ENST00000607089 556 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC091925.2-201ENST00000625059 256 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC116618.1-201ENST00000634617 774 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 FAM35DP-201ENST00000323387 2712 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC004925.1-201ENST00000624256 2706 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC007685.1-201ENST00000329806 452 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 RNU6-600P-201ENST00000362524 99 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 RNA5SP322-201ENST00000363617 119 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 RNA5SP235-201ENST00000365411 114 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 SNORD51-201ENST00000384320 80 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 PSMA6P3-201ENST00000428242 164 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 ATP5HP2-201ENST00000433885 485 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AL356535.1-201ENST00000440335 398 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 CR769776.1-201ENST00000441254 787 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 RPL26P28-201ENST00000451325 435 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 RPS24P6-201ENST00000452670 400 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 SNORD11.1-201ENST00000459482 85 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AL672167.3-201ENST00000465951 960 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 HMGB1P25-201ENST00000468402 607 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 RPL23AP55-201ENST00000498163 452 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 TMEM251P1-201ENST00000503717 318 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC020699.1-201ENST00000505161 445 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC020593.1-201ENST00000507399 299 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC006390.1-201ENST00000508068 283 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 SNORA31.20-201ENST00000517111 133 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 MED28P5-201ENST00000528254 438 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 CBX3P5-201ENST00000552017 521 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 NBEAP1-201ENST00000554452 979 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 BNIP3P5-201ENST00000562290 498 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AL512347.1-201ENST00000566420 503 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AGGF1P5-201ENST00000567900 919 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC120057.2-201ENST00000571520 271 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 MIR4286-201ENST00000580651 93 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 AL606490.9-201ENST00000603331 271 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC004987.4-201ENST00000603383 338 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC007349.4-201ENST00000608114 532 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 AC097478.2-201ENST00000610572 514 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 uc_338.32-201ENST00000615087 172 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 MIR6875-201ENST00000617506 72 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 MIR6500-201ENST00000622700 86 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 MIR4278-201ENST00000636094 69 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 AL049780.3-201ENST00000624612 1583 ntBASIC4.13□□□□□ -1.75
VPS28Q9UK41 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS28Q9UK41 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
VPS28Q9UK41 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 AL079343.1-201ENST00000572358 1771 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC106871.1-201ENST00000568324 3102 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 RNU1-89P-201ENST00000384592 164 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 RNU6-712P-201ENST00000410558 100 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 RNU2-37P-201ENST00000410695 177 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS28Q9UK41 AF228730.2-201ENST00000438784 848 ntBASIC4.12□□□□□ -1.75
VPS28Q9UK41 MTND2P19-201ENST00000449129 1012 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms