Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.46□□□□□ -2.01
VPS13AQ96RL7 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 SKINT1L-201ENST00000401057 817 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 RPL32P35-201ENST00000415214 394 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 NANOGP5-201ENST00000424456 877 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 OR4U1P-201ENST00000554958 912 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 MIR6845-201ENST00000613182 61 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 MIR6873-201ENST00000622788 63 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AC087565.3-202ENST00000642085 1603 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AL024509.2-201ENST00000493462 493 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AC117522.2-201ENST00000510049 657 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AC090281.1-201ENST00000523019 276 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 HPRT1P3-201ENST00000539521 576 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 AC008277.2-201ENST00000605196 797 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 FAM35BP-202ENST00000497389 3337 ntBASIC2.46□□□□□ -2.02
VPS13AQ96RL7 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
VPS13AQ96RL7 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 MIR423-201ENST00000362201 94 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 RN7SKP32-201ENST00000410167 303 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AC007064.1-201ENST00000412238 351 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AP000936.3-201ENST00000438127 255 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AC034244.2-201ENST00000514668 858 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 RANP3-201ENST00000530970 276 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AC003982.1-202ENST00000469928 248 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 RFESD-208ENST00000513950 464 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AL158196.1-201ENST00000616786 434 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 NDUFA5P4-201ENST00000436704 385 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 RPL23AP16-201ENST00000441715 421 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 TAF9P1-201ENST00000445421 515 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 TAF9P2-201ENST00000454958 515 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 SNRPGP9-201ENST00000456025 225 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS13AQ96RL7 AC023813.4-201ENST00000607580 580 ntBASIC2.45□□□□□ -2.02
VPS13AQ96RL7 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 AC007342.7-201ENST00000624610 2337 ntBASIC2.44□□□□□ -2.02
VPS13AQ96RL7 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 AC245054.2-201ENST00000415639 319 ntBASIC2.44□□□□□ -2.02
VPS13AQ96RL7 AC245291.1-201ENST00000419501 328 ntBASIC2.44□□□□□ -2.02
VPS13AQ96RL7 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 FAM92A1P2-202ENST00000504766 877 ntBASIC2.44□□□□□ -2.02
VPS13AQ96RL7 GNAI2P1-201ENST00000541815 315 ntBASIC2.44□□□□□ -2.02
VPS13AQ96RL7 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 MIR6779-201ENST00000617283 64 ntBASIC2.44□□□□□ -2.02
VPS13AQ96RL7 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
VPS13AQ96RL7 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 MIR2276-201ENST00000516886 89 ntBASIC2.43□□□□□ -2.02
VPS13AQ96RL7 AC068657.1-201ENST00000520807 306 ntBASIC2.43□□□□□ -2.02
VPS13AQ96RL7 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 AP000919.1-202ENST00000581139 1264 ntBASIC2.43□□□□□ -2.02
VPS13AQ96RL7 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 AC022031.1-201ENST00000585985 2593 ntBASIC2.43□□□□□ -2.02
VPS13AQ96RL7 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS13AQ96RL7 MTCO3P11-201ENST00000455103 774 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms