Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR4505-201ENST00000582238 73 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC008521.2-201ENST00000591021 259 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AP000654.2-201ENST00000605633 586 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 RNA5SP440-201ENST00000612665 119 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 RN7SL787P-201ENST00000613000 284 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC123768.4-201ENST00000616244 701 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL122125.1-201ENST00000616999 600 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC087588.2-201ENST00000617667 426 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC127024.6-201ENST00000621598 424 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 TTK-211ENST00000627129 240 ntTSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC144833.1-201ENST00000567953 4089 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL442128.2-201ENST00000620246 1824 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AL122126.1-201ENST00000546905 1318 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 RNA5SP453-201ENST00000362503 119 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-179P-201ENST00000363350 107 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 RNA5SP122-201ENST00000384457 108 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AL354868.1-201ENST00000417077 482 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 DPPA2P2-201ENST00000418220 897 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 RPL7L1P10-201ENST00000427790 463 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 BX276092.6-201ENST00000430476 250 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AL161636.2-201ENST00000445179 927 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 BX276092.8-201ENST00000455722 250 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC079168.1-201ENST00000458741 345 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC006967.1-201ENST00000467608 589 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AL136126.1-201ENST00000473603 402 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 PPIAP19-201ENST00000486414 492 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-976P-201ENST00000516086 111 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-566P-201ENST00000516790 107 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 snoU109.6-201ENST00000516831 118 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 NRBF2P4-201ENST00000520874 850 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AL049872.1-201ENST00000556323 322 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 SULT1C2P2-201ENST00000562517 294 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 MIR3942-201ENST00000585264 109 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 VN1R107P-201ENST00000601784 209 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 U6.114-201ENST00000636407 96 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AL359922.3-201ENST00000624779 1670 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC012618.3-205ENST00000637896 1496 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 AC007938.2-201ENST00000604666 2634 ntBASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
UBE3DQ7Z6J8 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC235565.1-201ENST00000456962 1325 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 178 ms