Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA1P55317 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA1P55317 AP003072.4-201ENST00000624580 310 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AC048347.1-201ENST00000624621 427 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA1P55317 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA1P55317 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA1P55317 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
FOXA1P55317 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA1P55317 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA1P55317 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA1P55317 AL161431.1-201ENST00000618966 4205 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA1P55317 MTND5P1-201ENST00000445440 1375 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
FOXA1P55317 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA1P55317 SNORA9.2-201ENST00000365361 133 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 OR52E6-202ENST00000379946 954 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 RN7SKP123-201ENST00000410732 291 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC091390.3-201ENST00000426478 338 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA1P55317 TRIAP1P1-201ENST00000427062 225 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA1P55317 TRIM60P13-201ENST00000432350 1283 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 OR2B8P-201ENST00000432841 938 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA1P55317 MED6P1-201ENST00000439659 713 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.77□□□□□ -1.97
FOXA1P55317 TPMTP4-201ENST00000450749 678 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA1P55317 HMGB3P30-201ENST00000457863 606 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA1P55317 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA1P55317 SSR3-208ENST00000496050 579 ntTSL 4 BASIC2.77□□□□□ -1.97
FOXA1P55317 AC025459.1-201ENST00000504072 156 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC026427.2-201ENST00000506228 536 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA1P55317 PSMA2P1-201ENST00000526365 646 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA1P55317 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA1P55317 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA1P55317 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.77□□□□□ -1.97
FOXA1P55317 MIR4506-201ENST00000584693 77 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC069234.5-201ENST00000611056 416 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA1P55317 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA1P55317 Z99129.2-201ENST00000619967 314 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 AC010338.1-201ENST00000621823 717 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 MIR6733-201ENST00000635723 61 ntBASIC2.77□□□□□ -1.97
FOXA1P55317 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.76□□□□□ -1.97
FOXA1P55317 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA1P55317 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
FOXA1P55317 DYNLT3P1-201ENST00000378574 347 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RNU4-31P-201ENST00000384211 141 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 CCNB2P1-201ENST00000399411 1150 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 HSPE1P26-201ENST00000405341 275 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RNA5SP129-201ENST00000410276 118 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RNU4-74P-201ENST00000411280 161 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA1P55317 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA1P55317 AC093151.1-201ENST00000427711 313 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA1P55317 UBE2V1P1-201ENST00000430836 445 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RPS24P8-201ENST00000431490 402 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA1P55317 AL662791.1-201ENST00000441992 928 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 MTND2P8-201ENST00000450555 1025 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA1P55317 BX510359.1-201ENST00000456973 237 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RPL27AP5-201ENST00000469428 449 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 AC003982.1-202ENST00000469928 248 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RN7SL807P-201ENST00000470923 297 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RPL7P5-201ENST00000471472 736 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA1P55317 RNA5SP385-201ENST00000515947 110 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RNU2-58P-201ENST00000516403 183 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA1P55317 HAUS1P3-201ENST00000523909 662 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 AP004242.1-201ENST00000533701 349 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 OR4H12P-201ENST00000556269 907 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA1P55317 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA1P55317 IGHV3-29-201ENST00000604817 344 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA1P55317 AC005046.1-201ENST00000608515 625 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 AC110792.4-201ENST00000609843 298 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
FOXA1P55317 PLCE1P1-201ENST00000622094 305 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
FOXA1P55317 AC092593.1-201ENST00000515413 1815 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 RNF6P1-201ENST00000444889 1784 ntBASIC2.76□□□□□ -1.97
FOXA1P55317 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA1P55317 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA1P55317 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.76□□□□□ -1.97
FOXA1P55317 AC009501.3-201ENST00000605001 1352 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA1P55317 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms