Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ELOCP29-201ENST00000588193 334 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL4A4P53420 AC011492.1-201ENST00000600023 315 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 AC091057.3-201ENST00000602684 733 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 AL445435.1-201ENST00000604232 665 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 AC138473.1-201ENST00000605717 526 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 AL008729.2-201ENST00000606393 473 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 AL138955.1-201ENST00000622881 1040 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
COL4A4P53420 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.21□□□□□ -1.89
COL4A4P53420 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A4P53420 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.21□□□□□ -1.9
COL4A4P53420 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.21□□□□□ -1.9
COL4A4P53420 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A4P53420 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
COL4A4P53420 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A4P53420 AL356057.1-202ENST00000402263 756 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 RPL23AP48-201ENST00000406913 488 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A4P53420 TOMM20P4-201ENST00000427861 435 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.21□□□□□ -1.9
COL4A4P53420 AC087499.2-201ENST00000432861 149 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.21□□□□□ -1.9
COL4A4P53420 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.21□□□□□ -1.9
COL4A4P53420 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.21□□□□□ -1.9
COL4A4P53420 Z99714.1-201ENST00000450463 807 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 PRDX3P4-201ENST00000470828 747 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 METTL15P1-201ENST00000481421 1045 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.21□□□□□ -1.9
COL4A4P53420 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC3.21□□□□□ -1.9
COL4A4P53420 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.21□□□□□ -1.9
COL4A4P53420 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.21□□□□□ -1.9
COL4A4P53420 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.21□□□□□ -1.9
COL4A4P53420 CD24P2-201ENST00000565486 219 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.21□□□□□ -1.9
COL4A4P53420 AC068790.2-201ENST00000602601 557 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC3.21□□□□□ -1.9
COL4A4P53420 AC087752.4-201ENST00000605911 462 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.21□□□□□ -1.9
COL4A4P53420 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.21□□□□□ -1.9
COL4A4P53420 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.21□□□□□ -1.9
COL4A4P53420 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A4P53420 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A4P53420 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.21□□□□□ -1.9
COL4A4P53420 MAPK10-373ENST00000641983 6772 ntBASIC3.21□□□□□ -1.9
COL4A4P53420 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A4P53420 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
COL4A4P53420 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A4P53420 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A4P53420 AL049545.1-201ENST00000401856 572 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 UBE2V1P15-201ENST00000407776 448 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 RNU6-564P-201ENST00000410983 104 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 MTCYBP7-201ENST00000419540 1134 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC006960.1-201ENST00000419980 153 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC244033.1-201ENST00000426826 870 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 USP9YP14-201ENST00000430663 563 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 MTCO1P57-201ENST00000432182 261 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC004854.1-201ENST00000440356 349 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC114878.1-201ENST00000441166 358 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 HMGN1P5-201ENST00000448591 263 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 ART2BP-201ENST00000453501 499 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 RPS20P32-201ENST00000456044 356 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 ST13P14-201ENST00000474095 734 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC132942.1-201ENST00000486753 483 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 RN7SL20P-201ENST00000488827 297 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A4P53420 AC010627.1-201ENST00000503819 1294 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 MTND3P24-201ENST00000506306 329 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC025768.1-201ENST00000510057 267 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
COL4A4P53420 RFPL4AP3-201ENST00000515267 345 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A4P53420 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.2□□□□□ -1.9
COL4A4P53420 LRRC34P1-201ENST00000542742 915 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.2□□□□□ -1.9
COL4A4P53420 AL049838.1-201ENST00000563647 981 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A4P53420 AC005776.1-201ENST00000603164 290 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 ABI1P1-201ENST00000603375 1120 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 OR4H6P-202ENST00000603819 340 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC110741.2-201ENST00000605278 268 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC120053.1-201ENST00000607706 736 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC090116.1-201ENST00000615679 446 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AP002967.1-201ENST00000624203 539 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.2□□□□□ -1.9
COL4A4P53420 AL513185.3-201ENST00000433335 1300 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
COL4A4P53420 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
COL4A4P53420 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 XKRY2-202ENST00000623874 1581 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 XKRY-202ENST00000624960 1581 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A4P53420 OR1S2-201ENST00000302592 978 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 RNU1-87P-201ENST00000363727 170 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A4P53420 SNORA46-201ENST00000384762 135 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms