Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RPL21P12-201ENST00000559810 515 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC233702.9-201ENST00000581528 203 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC5.6□□□□□ -1.51
LIG3P49916 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 AL512782.1-201ENST00000603093 364 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 AC025588.3-201ENST00000604182 274 ntBASIC5.6□□□□□ -1.51
LIG3P49916 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC093913.1-201ENST00000614178 329 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AL049794.2-201ENST00000616301 365 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC005858.4-201ENST00000623191 700 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC068870.1-201ENST00000563737 2455 ntBASIC5.6□□□□□ -1.51
LIG3P49916 STX3-208ENST00000641815 3236 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC083843.2-201ENST00000568248 6253 ntBASIC5.6□□□□□ -1.51
LIG3P49916 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG3P49916 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.6□□□□□ -1.51
LIG3P49916 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
LIG3P49916 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG3P49916 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIG3P49916 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
LIG3P49916 AC091046.3-201ENST00000631455 1574 ntBASIC5.59□□□□□ -1.51
LIG3P49916 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG3P49916 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG3P49916 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG3P49916 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG3P49916 OR1S2-201ENST00000302592 978 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AL121886.1-201ENST00000358609 435 ntBASIC5.59□□□□□ -1.51
LIG3P49916 RNY3P13-201ENST00000365542 102 ntBASIC5.59□□□□□ -1.51
LIG3P49916 RNU6-510P-201ENST00000391239 108 ntBASIC5.59□□□□□ -1.51
LIG3P49916 RPS20P5-201ENST00000434808 360 ntBASIC5.59□□□□□ -1.51
LIG3P49916 FTH1P1-201ENST00000437933 532 ntBASIC5.59□□□□□ -1.51
LIG3P49916 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.59□□□□□ -1.51
LIG3P49916 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIG3P49916 MRPL50P4-201ENST00000446432 475 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC108059.3-201ENST00000456388 214 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AL163973.1-201ENST00000484753 577 ntBASIC5.59□□□□□ -1.51
LIG3P49916 RN7SL184P-201ENST00000488308 297 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.59□□□□□ -1.51
LIG3P49916 HSPD1P15-201ENST00000505573 1122 ntBASIC5.59□□□□□ -1.51
LIG3P49916 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIG3P49916 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG3P49916 FTH1P21-201ENST00000512179 511 ntBASIC5.59□□□□□ -1.51
LIG3P49916 RNU7-30P-201ENST00000516835 62 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG3P49916 AC011979.2-201ENST00000527568 352 ntBASIC5.59□□□□□ -1.51
LIG3P49916 OR4P1P-201ENST00000530808 1136 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC087241.2-201ENST00000535801 324 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG3P49916 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC5.59□□□□□ -1.51
LIG3P49916 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG3P49916 GLUD1P4-201ENST00000590914 418 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC005498.1-201ENST00000592125 465 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC004853.1-201ENST00000604902 698 ntBASIC5.59□□□□□ -1.51
LIG3P49916 PART1_1.1-201ENST00000611761 217 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG3P49916 AC130324.3-201ENST00000614165 542 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC025574.2-201ENST00000615621 514 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC009248.2-201ENST00000619826 254 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AL160413.1-201ENST00000622780 310 ntBASIC5.59□□□□□ -1.51
LIG3P49916 AC132068.1-201ENST00000623805 459 ntBASIC5.59□□□□□ -1.51
LIG3P49916 MIR1302-1-201ENST00000637932 143 ntBASIC5.59□□□□□ -1.51
LIG3P49916 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIG3P49916 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
LIG3P49916 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
LIG3P49916 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.58□□□□□ -1.52
LIG3P49916 AL031119.1-201ENST00000404707 1879 ntBASIC5.58□□□□□ -1.52
LIG3P49916 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.58□□□□□ -1.52
LIG3P49916 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIG3P49916 LINC01963-201ENST00000562038 3148 ntBASIC5.58□□□□□ -1.52
LIG3P49916 RNA5SP319-201ENST00000362768 119 ntBASIC5.58□□□□□ -1.52
LIG3P49916 RNU4-48P-201ENST00000365559 182 ntBASIC5.58□□□□□ -1.52
LIG3P49916 OR1L6-202ENST00000373684 1044 ntBASIC5.58□□□□□ -1.52
LIG3P49916 RNU6-332P-201ENST00000391193 108 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AL078599.1-201ENST00000402075 293 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AL122016.1-201ENST00000403365 367 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AL391361.1-201ENST00000405580 489 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AL009179.1-201ENST00000406085 265 ntBASIC5.58□□□□□ -1.52
LIG3P49916 MIR1271-201ENST00000408537 86 ntBASIC5.58□□□□□ -1.52
LIG3P49916 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.58□□□□□ -1.52
LIG3P49916 AF228730.4-201ENST00000421457 183 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.58□□□□□ -1.52
LIG3P49916 SRIP2-201ENST00000428470 166 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.58□□□□□ -1.52
LIG3P49916 TMEM183AP1-205ENST00000432739 290 ntBASIC5.58□□□□□ -1.52
LIG3P49916 CEACAMP1-201ENST00000434624 1035 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC127537.2-201ENST00000439258 465 ntBASIC5.58□□□□□ -1.52
LIG3P49916 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.58□□□□□ -1.52
LIG3P49916 PPIAP21-201ENST00000464473 501 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AL049714.1-201ENST00000466686 347 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC006512.1-201ENST00000468816 291 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AL139099.1-201ENST00000497398 403 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.58□□□□□ -1.52
LIG3P49916 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.58□□□□□ -1.52
LIG3P49916 AC114797.1-201ENST00000514003 728 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC016065.2-201ENST00000514530 444 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.58□□□□□ -1.52
LIG3P49916 IGKV2-18-201ENST00000522607 343 ntBASIC5.58□□□□□ -1.52
LIG3P49916 SUB1P1-201ENST00000524415 382 ntBASIC5.58□□□□□ -1.52
LIG3P49916 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms