Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RHEBP3-201ENST00000411920 351 ntBASIC3.58□□□□□ -1.84
SOX3P41225 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 AL139421.1-201ENST00000423010 169 ntBASIC3.58□□□□□ -1.84
SOX3P41225 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 AC096632.1-201ENST00000427395 310 ntBASIC3.58□□□□□ -1.84
SOX3P41225 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.58□□□□□ -1.84
SOX3P41225 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX3P41225 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.58□□□□□ -1.84
SOX3P41225 CETN4P-201ENST00000432407 469 ntBASIC3.58□□□□□ -1.84
SOX3P41225 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX3P41225 RPL7P31-201ENST00000450192 724 ntBASIC3.58□□□□□ -1.84
SOX3P41225 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX3P41225 AC005726.1-201ENST00000494679 427 ntBASIC3.58□□□□□ -1.84
SOX3P41225 AC020593.1-201ENST00000507399 299 ntBASIC3.58□□□□□ -1.84
SOX3P41225 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.58□□□□□ -1.84
SOX3P41225 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX3P41225 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX3P41225 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.58□□□□□ -1.84
SOX3P41225 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
SOX3P41225 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.58□□□□□ -1.84
SOX3P41225 ZNF321P-202ENST00000550843 495 ntBASIC3.58□□□□□ -1.84
SOX3P41225 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
SOX3P41225 AL161713.1-201ENST00000555538 145 ntBASIC3.58□□□□□ -1.84
SOX3P41225 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX3P41225 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX3P41225 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX3P41225 AC009220.3-201ENST00000604318 586 ntBASIC3.58□□□□□ -1.84
SOX3P41225 AC019226.2-201ENST00000625973 424 ntBASIC3.58□□□□□ -1.84
SOX3P41225 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX3P41225 FAM157B-203ENST00000639350 358 ntBASIC3.58□□□□□ -1.84
SOX3P41225 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX3P41225 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.58□□□□□ -1.84
SOX3P41225 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 PNPT1P2-201ENST00000456768 2050 ntBASIC3.58□□□□□ -1.84
SOX3P41225 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX3P41225 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX3P41225 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
SOX3P41225 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX3P41225 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX3P41225 Y_RNA.25-201ENST00000362528 102 ntBASIC3.57□□□□□ -1.84
SOX3P41225 RNU6-216P-201ENST00000363282 104 ntBASIC3.57□□□□□ -1.84
SOX3P41225 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX3P41225 MIR506-201ENST00000384998 124 ntBASIC3.57□□□□□ -1.84
SOX3P41225 RSL24D1P4-201ENST00000400938 484 ntBASIC3.57□□□□□ -1.84
SOX3P41225 BTBD10P2-201ENST00000404779 676 ntBASIC3.57□□□□□ -1.84
SOX3P41225 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.57□□□□□ -1.84
SOX3P41225 RN7SKP156-201ENST00000410308 342 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC068533.2-201ENST00000411872 306 ntBASIC3.57□□□□□ -1.84
SOX3P41225 MTND4P22-201ENST00000413116 1169 ntBASIC3.57□□□□□ -1.84
SOX3P41225 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.57□□□□□ -1.84
SOX3P41225 RPL7P53-201ENST00000421245 739 ntBASIC3.57□□□□□ -1.84
SOX3P41225 SDCBPP2-201ENST00000424643 885 ntBASIC3.57□□□□□ -1.84
SOX3P41225 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SOX3P41225 OR4F13P-201ENST00000428478 931 ntBASIC3.57□□□□□ -1.84
SOX3P41225 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.57□□□□□ -1.84
SOX3P41225 AL365396.1-201ENST00000430854 671 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 AL445584.1-201ENST00000431451 330 ntBASIC3.57□□□□□ -1.84
SOX3P41225 RPL7P34-201ENST00000433316 712 ntBASIC3.57□□□□□ -1.84
SOX3P41225 MTND3P1-201ENST00000441336 220 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 Z77249.1-201ENST00000444622 1175 ntBASIC3.57□□□□□ -1.84
SOX3P41225 ELL2P4-201ENST00000446870 1376 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC239367.2-201ENST00000447309 705 ntBASIC3.57□□□□□ -1.84
SOX3P41225 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SOX3P41225 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.57□□□□□ -1.84
SOX3P41225 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 ANKRD26P4-201ENST00000455755 950 ntBASIC3.57□□□□□ -1.84
SOX3P41225 MTCO3P2-201ENST00000457365 171 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC013828.1-201ENST00000481845 158 ntBASIC3.57□□□□□ -1.84
SOX3P41225 RPL7P24-201ENST00000493052 752 ntBASIC3.57□□□□□ -1.84
SOX3P41225 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SOX3P41225 SAP18P1-201ENST00000512058 390 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC104057.1-201ENST00000515547 497 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.57□□□□□ -1.84
SOX3P41225 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.57□□□□□ -1.84
SOX3P41225 AC090502.2-201ENST00000549267 280 ntBASIC3.57□□□□□ -1.84
SOX3P41225 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.57□□□□□ -1.84
SOX3P41225 AL389895.1-201ENST00000554127 252 ntBASIC3.57□□□□□ -1.84
SOX3P41225 HIGD1AP17-201ENST00000554576 276 ntBASIC3.57□□□□□ -1.84
SOX3P41225 DUXAP1-201ENST00000556632 463 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.57□□□□□ -1.84
SOX3P41225 SULT1C2P1-202ENST00000562418 459 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AGGF1P8-201ENST00000562979 1000 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SOX3P41225 AC087499.8-201ENST00000578406 226 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms