Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.74□□□□□ -1.49
MSX1P28360 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.74□□□□□ -1.49
MSX1P28360 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
MSX1P28360 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX1P28360 Y_RNA.126-201ENST00000363382 111 ntBASIC5.74□□□□□ -1.49
MSX1P28360 RNU6-1059P-201ENST00000363752 98 ntBASIC5.74□□□□□ -1.49
MSX1P28360 RN7SKP78-201ENST00000364711 318 ntBASIC5.74□□□□□ -1.49
MSX1P28360 RNU6-434P-201ENST00000384376 107 ntBASIC5.74□□□□□ -1.49
MSX1P28360 AL109755.1-201ENST00000401791 649 ntBASIC5.74□□□□□ -1.49
MSX1P28360 RNU2-15P-201ENST00000410692 191 ntBASIC5.74□□□□□ -1.49
MSX1P28360 ELOCP20-201ENST00000422460 345 ntBASIC5.74□□□□□ -1.49
MSX1P28360 RPL12P34-201ENST00000424532 479 ntBASIC5.74□□□□□ -1.49
MSX1P28360 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.74□□□□□ -1.49
MSX1P28360 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX1P28360 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.74□□□□□ -1.49
MSX1P28360 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX1P28360 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX1P28360 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX1P28360 SNRPCP3-201ENST00000474888 476 ntBASIC5.74□□□□□ -1.49
MSX1P28360 MED28P2-201ENST00000475771 317 ntBASIC5.74□□□□□ -1.49
MSX1P28360 AP002453.1-201ENST00000492327 668 ntBASIC5.74□□□□□ -1.49
MSX1P28360 RN7SL101P-201ENST00000496350 279 ntBASIC5.74□□□□□ -1.49
MSX1P28360 HMGB1P35-201ENST00000503360 598 ntBASIC5.74□□□□□ -1.49
MSX1P28360 AC093852.1-201ENST00000503587 266 ntBASIC5.74□□□□□ -1.49
MSX1P28360 COX7A2P2-201ENST00000505291 250 ntBASIC5.74□□□□□ -1.49
MSX1P28360 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX1P28360 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX1P28360 AC011411.1-201ENST00000509592 876 ntBASIC5.74□□□□□ -1.49
MSX1P28360 RNA5SP400-201ENST00000517155 111 ntBASIC5.74□□□□□ -1.49
MSX1P28360 AC060775.1-201ENST00000518241 520 ntBASIC5.74□□□□□ -1.49
MSX1P28360 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX1P28360 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.74□□□□□ -1.49
MSX1P28360 AC025857.2-201ENST00000602711 238 ntBASIC5.74□□□□□ -1.49
MSX1P28360 HMGN2P28-201ENST00000606102 262 ntBASIC5.74□□□□□ -1.49
MSX1P28360 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX1P28360 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX1P28360 AC241377.1-201ENST00000619797 406 ntBASIC5.74□□□□□ -1.49
MSX1P28360 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX1P28360 MIR4272-201ENST00000635924 64 ntBASIC5.74□□□□□ -1.49
MSX1P28360 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
MSX1P28360 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.74□□□□□ -1.49
MSX1P28360 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX1P28360 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
MSX1P28360 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 AC105749.1-201ENST00000631338 2008 ntBASIC5.74□□□□□ -1.49
MSX1P28360 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
MSX1P28360 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX1P28360 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.73□□□□□ -1.49
MSX1P28360 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
MSX1P28360 GUCY1B2-204ENST00000531898 1979 ntBASIC5.73□□□□□ -1.49
MSX1P28360 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.73□□□□□ -1.49
MSX1P28360 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 XIAPP3-201ENST00000312918 795 ntBASIC5.73□□□□□ -1.49
MSX1P28360 RNU6-1078P-201ENST00000364522 103 ntBASIC5.73□□□□□ -1.49
MSX1P28360 Y_RNA.518-201ENST00000384552 113 ntBASIC5.73□□□□□ -1.49
MSX1P28360 MIR433-201ENST00000384837 93 ntBASIC5.73□□□□□ -1.49
MSX1P28360 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
MSX1P28360 AC097374.1-203ENST00000400783 485 ntBASIC5.73□□□□□ -1.49
MSX1P28360 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX1P28360 AC097713.2-201ENST00000430199 356 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX1P28360 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX1P28360 AL645936.1-201ENST00000441979 518 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AC092967.1-201ENST00000449016 481 ntBASIC5.73□□□□□ -1.49
MSX1P28360 RANP2-201ENST00000456833 229 ntBASIC5.73□□□□□ -1.49
MSX1P28360 PRELID3BP1-201ENST00000457142 540 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AC068228.1-201ENST00000461723 211 ntBASIC5.73□□□□□ -1.49
MSX1P28360 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
MSX1P28360 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX1P28360 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX1P28360 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX1P28360 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX1P28360 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX1P28360 RNU2-69P-201ENST00000516061 100 ntBASIC5.73□□□□□ -1.49
MSX1P28360 RNU6-111P-201ENST00000517179 105 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX1P28360 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX1P28360 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC5.73□□□□□ -1.49
MSX1P28360 CYCSP27-201ENST00000527643 293 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AP001284.1-201ENST00000528393 2118 ntBASIC5.73□□□□□ -1.49
MSX1P28360 RPA2P3-201ENST00000533268 770 ntBASIC5.73□□□□□ -1.49
MSX1P28360 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX1P28360 AC022080.3-201ENST00000544433 482 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms