Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MTCO3P22-201ENST00000603219 784 ntBASIC2.43□□□□□ -2.02
HLA-DMBP28068 AL591516.1-201ENST00000611326 274 ntBASIC2.43□□□□□ -2.02
HLA-DMBP28068 AL590240.3-201ENST00000621416 943 ntBASIC2.43□□□□□ -2.02
HLA-DMBP28068 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.43□□□□□ -2.02
HLA-DMBP28068 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC2.43□□□□□ -2.02
HLA-DMBP28068 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC2.43□□□□□ -2.02
HLA-DMBP28068 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
HLA-DMBP28068 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
HLA-DMBP28068 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
HLA-DMBP28068 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
HLA-DMBP28068 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.43□□□□□ -2.02
HLA-DMBP28068 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
HLA-DMBP28068 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AL136164.4-201ENST00000625013 2135 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 Z83843.1-201ENST00000604070 3685 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 NSRP1P1-201ENST00000444067 1693 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 U3.6-201ENST00000363622 211 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AGR3-202ENST00000402239 563 ntTSL 2 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AL138880.1-201ENST00000405824 642 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 TOMM22P1-201ENST00000418578 312 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC005326.1-201ENST00000429197 123 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 RPL7P29-201ENST00000437151 728 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 AL591503.2-201ENST00000442314 1005 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 NDUFAF4P2-201ENST00000445374 520 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 GAPDHP27-201ENST00000447427 1020 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 RN7SL807P-201ENST00000470923 297 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 CFL2-206ENST00000556161 546 ntTSL 4 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 RPL21P12-201ENST00000559810 515 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 MIR4474-201ENST00000579189 78 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC084036.1-201ENST00000609190 508 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AL442067.2-201ENST00000614033 363 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC091953.5-201ENST00000622919 233 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC002546.1-201ENST00000588041 2504 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 PABPC1P7-201ENST00000413177 1513 ntBASIC2.42□□□□□ -2.02
HLA-DMBP28068 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
HLA-DMBP28068 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
HLA-DMBP28068 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC024341.1-201ENST00000526444 1552 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
HLA-DMBP28068 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
HLA-DMBP28068 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 RNU6-525P-201ENST00000363685 104 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 SNORA9-201ENST00000384215 133 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 RPL21P3-201ENST00000395517 478 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 RNA5SP344-201ENST00000411081 104 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 HMGN1P24-201ENST00000412282 298 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC093151.1-201ENST00000427711 313 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC005300.1-201ENST00000428401 373 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC006028.1-201ENST00000438379 402 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC146507.2-201ENST00000460608 476 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 RPL5P24-201ENST00000463742 885 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 RPL21P13-201ENST00000488305 481 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC093278.1-201ENST00000494700 600 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 HMGB1P47-201ENST00000511281 589 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC008676.3-201ENST00000521237 435 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 HIGD1AP1-201ENST00000550979 275 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC055876.1-202ENST00000567053 138 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC010653.1-201ENST00000571108 881 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 MTCO3P24-201ENST00000572729 782 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AC100793.4-201ENST00000613683 429 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms