Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 BDP1P-201ENST00000582658 1990 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC5.44□□□□□ -1.54
COL8A1P27658 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
COL8A1P27658 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.43□□□□□ -1.54
COL8A1P27658 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
COL8A1P27658 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.43□□□□□ -1.54
COL8A1P27658 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
COL8A1P27658 AC008957.3-201ENST00000624112 2242 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 AC104837.1-201ENST00000444644 1587 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
COL8A1P27658 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC5.43□□□□□ -1.54
COL8A1P27658 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.43□□□□□ -1.54
COL8A1P27658 RNU6-444P-201ENST00000383988 108 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 RNU6-1168P-201ENST00000390831 104 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 RNU6-550P-201ENST00000391057 101 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 RN7SKP271-201ENST00000410528 320 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC5.43□□□□□ -1.54
COL8A1P27658 AL158071.1-201ENST00000430315 461 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 RHOT1P3-201ENST00000436571 331 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 RPL12P3-201ENST00000440080 396 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 RPL21P89-201ENST00000444021 467 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 AC073850.1-201ENST00000449243 255 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.43□□□□□ -1.54
COL8A1P27658 RPL21P104-201ENST00000464143 478 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 RPS23P5-201ENST00000495419 428 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 CDH12P4-201ENST00000517835 295 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 CDH12P3-201ENST00000517935 295 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 CDH12P1-201ENST00000518435 295 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 AC034114.1-201ENST00000520293 285 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 DEFB108E-201ENST00000524692 240 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 CBX3P8-201ENST00000532412 525 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 AC004584.2-201ENST00000570407 410 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 AC004232.1-201ENST00000571388 208 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 COX6CP7-201ENST00000597056 208 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 Z83818.1-201ENST00000603584 150 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
COL8A1P27658 AL354718.1-201ENST00000619764 589 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 AL353662.3-201ENST00000625131 237 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 AL391684.1-202ENST00000641293 1636 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
COL8A1P27658 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC5.43□□□□□ -1.54
COL8A1P27658 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 AL137058.3-201ENST00000624531 3099 ntBASIC5.43□□□□□ -1.54
COL8A1P27658 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL8A1P27658 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.42□□□□□ -1.54
COL8A1P27658 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.42□□□□□ -1.54
COL8A1P27658 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 AC103710.2-202ENST00000641454 2853 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
COL8A1P27658 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 OFD1P17-201ENST00000437639 3018 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 Y_RNA.399-201ENST00000383955 105 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 SNORD20-201ENST00000384550 80 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 RNA5SP156-201ENST00000410250 110 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 RNU6-387P-201ENST00000411331 105 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 AL133384.1-201ENST00000412744 351 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 RPL31P45-201ENST00000419532 356 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 FTH1P1-201ENST00000437933 532 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 AC004866.2-201ENST00000438285 481 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
COL8A1P27658 CRYGGP-201ENST00000443337 145 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 NUTF2P3-201ENST00000448540 384 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.42□□□□□ -1.54
COL8A1P27658 HMGB1P4-201ENST00000455362 567 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 CYCSP34-201ENST00000458172 304 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 RN7SL326P-201ENST00000477493 296 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 AC109925.1-201ENST00000478069 331 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 FTH1P8-201ENST00000498161 514 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC5.42□□□□□ -1.54
COL8A1P27658 AKIRIN2P1-201ENST00000505898 352 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.42□□□□□ -1.54
COL8A1P27658 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.42□□□□□ -1.54
COL8A1P27658 IGKV2-23-201ENST00000518729 323 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.42□□□□□ -1.54
COL8A1P27658 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC5.42□□□□□ -1.54
COL8A1P27658 HSPE1P2-201ENST00000554777 306 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.42□□□□□ -1.54
COL8A1P27658 MIR3691-201ENST00000578066 90 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC5.42□□□□□ -1.54
COL8A1P27658 RPL12P48-201ENST00000605620 304 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 MIR6810-201ENST00000622701 70 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 CDRT1-208ENST00000630868 794 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.42□□□□□ -1.54
COL8A1P27658 AL662795.2-201ENST00000624252 3706 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms