Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
COL6A1P12109 SNORD116-23-201ENST00000384645 92 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 RNU6-1009P-201ENST00000390996 107 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 MTCO3P40-201ENST00000392516 676 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.29□□□□□ -1.56
COL6A1P12109 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.29□□□□□ -1.56
COL6A1P12109 AL356387.2-201ENST00000422272 243 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
COL6A1P12109 AC073335.1-201ENST00000427776 363 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 OR4C10P-201ENST00000434991 931 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 USP9YP8-201ENST00000441913 500 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 RPS27AP15-201ENST00000447672 466 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 DPPA3P1-201ENST00000448050 469 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 RPL26P28-201ENST00000451325 435 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AC092001.1-201ENST00000453012 261 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A1P12109 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A1P12109 AC021678.1-201ENST00000505195 936 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AF131216.2-201ENST00000512316 564 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A1P12109 OR5AQ1P-201ENST00000527596 927 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC5.29□□□□□ -1.56
COL6A1P12109 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A1P12109 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.29□□□□□ -1.56
COL6A1P12109 RN7SL652P-201ENST00000577769 300 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A1P12109 AC006130.2-201ENST00000586202 326 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A1P12109 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A1P12109 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 PRELID3BP8-201ENST00000604148 295 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AC112187.2-201ENST00000604345 283 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AL161729.4-201ENST00000604650 476 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AC069304.2-201ENST00000605154 435 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 AC010133.1-201ENST00000615809 842 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.29□□□□□ -1.56
COL6A1P12109 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.29□□□□□ -1.56
COL6A1P12109 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 CASC19-280ENST00000642102 1351 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A1P12109 LINC01109-201ENST00000603837 3081 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.28□□□□□ -1.56
COL6A1P12109 MTND5P17-201ENST00000418405 1603 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 SNORA73.1-201ENST00000363107 205 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC5.28□□□□□ -1.56
COL6A1P12109 XGY1-201ENST00000381172 446 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 PRRC2CP1-201ENST00000404428 159 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A1P12109 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A1P12109 AL953862.1-201ENST00000423016 168 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AC006946.1-201ENST00000429106 328 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 MTCO2P11-201ENST00000431069 680 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 RPL23AP15-201ENST00000450202 459 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.28□□□□□ -1.56
COL6A1P12109 NF1P3-201ENST00000457709 450 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC015724.1-201ENST00000478577 156 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC108078.1-201ENST00000508073 725 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AC024589.1-201ENST00000512207 263 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC027309.2-201ENST00000520566 192 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 MRPL49P2-201ENST00000521066 465 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A1P12109 AL359219.2-201ENST00000555184 348 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC093519.1-201ENST00000566109 298 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 BNIP3P9-201ENST00000603714 553 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AC087045.1-201ENST00000605856 382 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AC008536.2-201ENST00000607284 349 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC099669.2-201ENST00000616549 437 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AL359880.1-201ENST00000621879 266 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A1P12109 AC025125.1-201ENST00000624743 1922 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.28□□□□□ -1.56
COL6A1P12109 MTCO1P14-201ENST00000441695 1559 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.28□□□□□ -1.56
COL6A1P12109 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A1P12109 MAPK10-349ENST00000641767 3661 ntBASIC5.28□□□□□ -1.56
COL6A1P12109 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A1P12109 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
COL6A1P12109 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.28□□□□□ -1.56
COL6A1P12109 AC063976.2-201ENST00000425667 3556 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms