Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC023050.1-201ENST00000498198 304 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 AC079140.3-201ENST00000511111 550 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC010342.1-201ENST00000514047 877 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 HIGD1AP18-201ENST00000520730 278 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 HIGD1AP10-201ENST00000527837 282 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.81□□□□□ -1.64
COL3A1P02461 AC010198.2-201ENST00000550612 259 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 RPS3AP4-201ENST00000555161 764 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC006960.3-201ENST00000561845 705 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 SNORA59B-202ENST00000578183 701 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC087683.1-201ENST00000591187 441 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC022146.1-201ENST00000595307 847 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC007038.2-201ENST00000608095 740 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC104985.2-201ENST00000620598 500 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL3A1P02461 AL031595.2-201ENST00000624215 19071 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 AC017007.4-201ENST00000503353 1352 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.81□□□□□ -1.64
COL3A1P02461 RNU6-283P-201ENST00000364788 107 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.81□□□□□ -1.64
COL3A1P02461 RNU6-413P-201ENST00000384115 107 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 MTHFD2P2-201ENST00000407725 247 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC4.81□□□□□ -1.64
COL3A1P02461 NPM1P11-201ENST00000417106 855 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.81□□□□□ -1.64
COL3A1P02461 HSPD1P21-201ENST00000436541 245 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC4.81□□□□□ -1.64
COL3A1P02461 AC007327.1-201ENST00000447461 264 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AL627224.1-201ENST00000448334 444 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 BUD31P2-201ENST00000449374 300 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC233982.1-201ENST00000451247 436 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 SNORA59A-201ENST00000459326 152 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 PLGLA-201ENST00000465668 449 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 RPS6P4-201ENST00000494693 758 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.81□□□□□ -1.64
COL3A1P02461 AC138853.1-201ENST00000503549 823 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 AC004069.2-201ENST00000505438 1114 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 RNU6-579P-201ENST00000516879 102 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 RNU6-943P-201ENST00000516960 98 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 DUXAP2-201ENST00000519198 589 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 DEFB130C-202ENST00000530001 230 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.81□□□□□ -1.64
COL3A1P02461 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.81□□□□□ -1.64
COL3A1P02461 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 CLPTM1LP1-201ENST00000604519 484 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 FRG1HP-204ENST00000617940 757 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 AC018816.2-201ENST00000621460 353 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL3A1P02461 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.81□□□□□ -1.64
COL3A1P02461 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 LINC00561-201ENST00000565815 2738 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC009229.4-201ENST00000623854 1947 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL3A1P02461 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.8□□□□□ -1.64
COL3A1P02461 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL3A1P02461 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL3A1P02461 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL3A1P02461 AC087190.4-201ENST00000574616 8334 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.8□□□□□ -1.64
COL3A1P02461 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL3A1P02461 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.8□□□□□ -1.64
COL3A1P02461 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL3A1P02461 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.8□□□□□ -1.64
COL3A1P02461 RNA5SP322-201ENST00000363617 119 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
COL3A1P02461 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL3A1P02461 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC4.8□□□□□ -1.64
COL3A1P02461 SEPT14P24-201ENST00000447236 180 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC099563.1-201ENST00000456086 418 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 MTCO3P38-201ENST00000468910 766 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 RPL31P58-201ENST00000469001 379 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 RPL23AP71-201ENST00000470966 469 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC126182.1-201ENST00000478134 357 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC069528.1-202ENST00000482888 637 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.8□□□□□ -1.64
COL3A1P02461 MTATP6P22-201ENST00000507369 598 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.8□□□□□ -1.64
COL3A1P02461 AC022447.1-201ENST00000515358 464 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 RNU6-319P-201ENST00000516025 108 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.8□□□□□ -1.64
COL3A1P02461 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC4.8□□□□□ -1.64
COL3A1P02461 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.8□□□□□ -1.64
COL3A1P02461 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC4.8□□□□□ -1.64
COL3A1P02461 DUXAP1-201ENST00000556632 463 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 MIR4999-201ENST00000585029 91 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 VN1R92P-201ENST00000598511 928 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms