Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
COL5A3P25940 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.48
COL5A3P25940 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC24.32■■□□□ 1.48
COL5A3P25940 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC24.32■■□□□ 1.48
COL5A3P25940 HLA-F-220ENST00000434407 884 ntBASIC24.32■■□□□ 1.48
COL5A3P25940 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
COL5A3P25940 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC24.32■■□□□ 1.48
COL5A3P25940 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
COL5A3P25940 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC24.32■■□□□ 1.48
COL5A3P25940 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC24.32■■□□□ 1.48
COL5A3P25940 KRT17P6-201ENST00000453795 1220 ntBASIC24.32■■□□□ 1.48
COL5A3P25940 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC24.32■■□□□ 1.48
COL5A3P25940 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC24.32■■□□□ 1.48
COL5A3P25940 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC24.32■■□□□ 1.48
COL5A3P25940 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL5A3P25940 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL5A3P25940 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL5A3P25940 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC24.31■■□□□ 1.48
COL5A3P25940 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
COL5A3P25940 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC24.31■■□□□ 1.48
COL5A3P25940 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC24.31■■□□□ 1.48
COL5A3P25940 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC24.31■■□□□ 1.48
COL5A3P25940 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL5A3P25940 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
COL5A3P25940 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL5A3P25940 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL5A3P25940 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL5A3P25940 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL5A3P25940 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL5A3P25940 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC24.3■■□□□ 1.48
COL5A3P25940 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL5A3P25940 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL5A3P25940 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC24.3■■□□□ 1.48
COL5A3P25940 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC24.3■■□□□ 1.48
COL5A3P25940 AL121672.3-201ENST00000608644 468 ntBASIC24.3■■□□□ 1.48
COL5A3P25940 AL732292.2-201ENST00000609649 430 ntBASIC24.3■■□□□ 1.48
COL5A3P25940 AL162377.1-201ENST00000618844 1793 ntBASIC24.3■■□□□ 1.48
COL5A3P25940 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
COL5A3P25940 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL5A3P25940 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL5A3P25940 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL5A3P25940 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC24.3■■□□□ 1.48
COL5A3P25940 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC24.3■■□□□ 1.48
COL5A3P25940 CHCHD2P8-201ENST00000429873 447 ntBASIC24.3■■□□□ 1.48
COL5A3P25940 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.3■■□□□ 1.48
COL5A3P25940 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC24.3■■□□□ 1.48
COL5A3P25940 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC24.3■■□□□ 1.48
COL5A3P25940 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
COL5A3P25940 AC092329.2-201ENST00000598402 547 ntBASIC24.3■■□□□ 1.48
COL5A3P25940 AL031008.1-201ENST00000619963 541 ntBASIC24.3■■□□□ 1.48
COL5A3P25940 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC24.29■■□□□ 1.48
COL5A3P25940 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL5A3P25940 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL5A3P25940 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL5A3P25940 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC24.29■■□□□ 1.48
COL5A3P25940 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC24.29■■□□□ 1.48
COL5A3P25940 BX276092.5-203ENST00000456199 560 ntBASIC24.29■■□□□ 1.48
COL5A3P25940 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC24.29■■□□□ 1.48
COL5A3P25940 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC24.29■■□□□ 1.48
COL5A3P25940 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL5A3P25940 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC24.29■■□□□ 1.48
COL5A3P25940 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL5A3P25940 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC24.28■■□□□ 1.48
COL5A3P25940 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL5A3P25940 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL5A3P25940 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC24.28■■□□□ 1.48
COL5A3P25940 KLK8-205ENST00000593490 267 ntTSL 3 BASIC24.28■■□□□ 1.48
COL5A3P25940 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC24.28■■□□□ 1.48
COL5A3P25940 AC079602.3-201ENST00000623931 403 ntBASIC24.28■■□□□ 1.48
COL5A3P25940 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL5A3P25940 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC24.28■■□□□ 1.48
COL5A3P25940 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
COL5A3P25940 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC24.28■■□□□ 1.48
COL5A3P25940 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL5A3P25940 GAS2L1P1-201ENST00000420145 1480 ntBASIC24.28■■□□□ 1.48
COL5A3P25940 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL5A3P25940 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
COL5A3P25940 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC24.28■■□□□ 1.48
COL5A3P25940 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL5A3P25940 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC24.27■■□□□ 1.48
COL5A3P25940 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC24.27■■□□□ 1.48
COL5A3P25940 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
COL5A3P25940 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC24.27■■□□□ 1.48
COL5A3P25940 AL162741.1-201ENST00000565563 1558 ntBASIC24.27■■□□□ 1.48
COL5A3P25940 AC004870.1-201ENST00000315132 882 ntBASIC24.27■■□□□ 1.48
COL5A3P25940 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC24.27■■□□□ 1.48
COL5A3P25940 AC079781.3-201ENST00000449110 356 ntBASIC24.27■■□□□ 1.48
COL5A3P25940 UNC93B7-201ENST00000509439 705 ntBASIC24.27■■□□□ 1.48
COL5A3P25940 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms