Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MIR4674-201ENST00000582457 87 ntBASIC20.14■□□□□ 0.81
COL6A3P12111 AC012645.4-201ENST00000610691 1061 ntBASIC20.14■□□□□ 0.81
COL6A3P12111 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL6A3P12111 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL6A3P12111 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL6A3P12111 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
COL6A3P12111 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.13■□□□□ 0.81
COL6A3P12111 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.13■□□□□ 0.81
COL6A3P12111 DNAJB3-201ENST00000446806 729 ntBASIC20.13■□□□□ 0.81
COL6A3P12111 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.13■□□□□ 0.81
COL6A3P12111 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.13■□□□□ 0.81
COL6A3P12111 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.13■□□□□ 0.81
COL6A3P12111 SCARNA2-201ENST00000458748 420 ntBASIC20.13■□□□□ 0.81
COL6A3P12111 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL6A3P12111 AC034105.1-201ENST00000563488 319 ntBASIC20.13■□□□□ 0.81
COL6A3P12111 AL356488.2-201ENST00000602755 427 ntBASIC20.13■□□□□ 0.81
COL6A3P12111 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.13■□□□□ 0.81
COL6A3P12111 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.13■□□□□ 0.81
COL6A3P12111 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.13■□□□□ 0.81
COL6A3P12111 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 HNRNPDP1-201ENST00000439535 754 ntBASIC20.12■□□□□ 0.81
COL6A3P12111 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.12■□□□□ 0.81
COL6A3P12111 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC20.12■□□□□ 0.81
COL6A3P12111 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.12■□□□□ 0.81
COL6A3P12111 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
COL6A3P12111 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.12■□□□□ 0.81
COL6A3P12111 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.12■□□□□ 0.81
COL6A3P12111 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.12■□□□□ 0.81
COL6A3P12111 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.12■□□□□ 0.81
COL6A3P12111 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL6A3P12111 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A3P12111 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.11■□□□□ 0.81
COL6A3P12111 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL6A3P12111 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.11■□□□□ 0.81
COL6A3P12111 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL6A3P12111 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A3P12111 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.11■□□□□ 0.81
COL6A3P12111 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A3P12111 KRT18P28-201ENST00000453838 1332 ntBASIC20.11■□□□□ 0.81
COL6A3P12111 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.11■□□□□ 0.81
COL6A3P12111 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A3P12111 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.11■□□□□ 0.81
COL6A3P12111 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
COL6A3P12111 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A3P12111 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A3P12111 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A3P12111 AC079602.3-201ENST00000623931 403 ntBASIC20.11■□□□□ 0.81
COL6A3P12111 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
COL6A3P12111 AL117328.2-201ENST00000624617 1940 ntBASIC20.11■□□□□ 0.81
COL6A3P12111 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.11■□□□□ 0.81
COL6A3P12111 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
COL6A3P12111 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A3P12111 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.11■□□□□ 0.81
COL6A3P12111 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.11■□□□□ 0.81
COL6A3P12111 RBM7-207ENST00000544582 692 ntTSL 3 BASIC20.11■□□□□ 0.81
COL6A3P12111 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.11■□□□□ 0.81
COL6A3P12111 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.11■□□□□ 0.81
COL6A3P12111 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A3P12111 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL6A3P12111 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
COL6A3P12111 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL6A3P12111 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
COL6A3P12111 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL6A3P12111 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.1■□□□□ 0.81
COL6A3P12111 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.1■□□□□ 0.81
COL6A3P12111 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC20.1■□□□□ 0.81
COL6A3P12111 AC093909.1-201ENST00000504731 1122 ntBASIC20.1■□□□□ 0.81
COL6A3P12111 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC20.1■□□□□ 0.81
COL6A3P12111 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC20.1■□□□□ 0.81
COL6A3P12111 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
COL6A3P12111 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 AL096865.1-201ENST00000606796 927 ntBASIC20.09■□□□□ 0.81
COL6A3P12111 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
COL6A3P12111 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.09■□□□□ 0.81
COL6A3P12111 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.09■□□□□ 0.81
COL6A3P12111 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
COL6A3P12111 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.09■□□□□ 0.81
COL6A3P12111 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.09■□□□□ 0.81
COL6A3P12111 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC20.09■□□□□ 0.81
COL6A3P12111 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.09■□□□□ 0.81
COL6A3P12111 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
COL6A3P12111 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.09■□□□□ 0.81
COL6A3P12111 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.09■□□□□ 0.81
COL6A3P12111 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
COL6A3P12111 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms