Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 PMS2P7-201ENST00000506558 1336 ntBASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 GUSBP5-202ENST00000510805 1989 ntBASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 PGAM5P1-201ENST00000518923 814 ntBASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 AC074051.2-201ENST00000565115 352 ntBASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 TP73-AS1-207ENST00000624167 988 ntBASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 DPP3P2-201ENST00000416030 1696 ntBASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 ECEL1P1-201ENST00000373592 1742 ntBASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 AF106564.1-201ENST00000607058 2553 ntBASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A6A6NMZ7 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 AC027796.2-201ENST00000575326 344 ntBASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 FBXW4P1-201ENST00000426721 2239 ntBASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 SAPCD2P3-201ENST00000455031 850 ntBASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 AC138894.3-201ENST00000603787 634 ntBASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.32■□□□□ 0.36
COL6A6A6NMZ7 KRT16P6-202ENST00000425692 1426 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 AC036111.1-201ENST00000533973 1582 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 PLK5-205ENST00000642079 1969 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 RNPS1P1-201ENST00000507437 918 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 RNF126P1-202ENST00000569893 925 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 AC121338.2-201ENST00000622535 1744 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 TMEM179-206ENST00000616017 1645 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 AC243591.1-201ENST00000452967 1364 ntBASIC17.31■□□□□ 0.36
COL6A6A6NMZ7 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms